Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JXQ entry

There is 1 chain in PDB entry 8JXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 1537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8JXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
12 17Right-handed 310
Helix 3
AA3
A
24 32Right-handed alpha
Helix 4
AA4
A
33 42Right-handed alpha
Helix 5
AA5
A
43 54Right-handed alpha
Helix 6
AA6
A
62 89Right-handed alpha
Helix 7
AA7
A
97 121Right-handed alpha
Helix 8
AA8
A
122 124Right-handed 310
Helix 9
AA9
A
134 139Right-handed alpha
Helix 10
AB1
A
144 156Right-handed alpha
Helix 11
AB2
A
161 184Right-handed alpha
Helix 12
AB3
A
193 197Right-handed 310
Helix 13
AB4
A
206 208Right-handed 310
Helix 14
AB5
A
209 217Right-handed alpha
Helix 15
AB6
A
234 257Right-handed alpha
Helix 16
AB7
A
309 316Right-handed alpha
Helix 17
AB8
A
325 335Right-handed alpha
Helix 18
AB9
A
338 341Right-handed 310
Helix 19
AC1
A
342 352Right-handed alpha
Helix 20
AC2
A
356 364Right-handed alpha
Helix 21
AC3
A
365 370Right-handed alpha
Helix 22
AC4
A
375 380Right-handed alpha
Helix 23
AC5
A
381 388Right-handed alpha
Helix 24
AC6
A
396 405Right-handed alpha
Helix 25
AC7
A
406 407Right-handed 310
Helix 26
AC8
A
408 412Right-handed 310
Helix 27
AC9
A
416 421Right-handed alpha
Helix 28
AD1
A
421 426Right-handed alpha
Helix 29
AD2
A
439 460Right-handed alpha
Helix 30
AD3
A
462 472Right-handed alpha
Helix 31
AD4
A
473 490Right-handed alpha
Helix 32
AD5
A
491 507Right-handed alpha
Helix 33
AD6
A
508 515Right-handed alpha
Helix 34
AD7
A
517 541Right-handed alpha
Helix 35
AD8
A
547 552Right-handed alpha
Helix 36
AD9
A
552 566Right-handed alpha
Helix 37
AE1
A
575 584Right-handed alpha
Helix 38
AE2
A
591 604Right-handed alpha
Helix 39
AE3
A
609 617Right-handed alpha
Helix 40
AE4
A
676 685Right-handed alpha
Helix 41
AE5
A
715 721Right-handed alpha
Helix 42
AE6
A
726 737Right-handed alpha
Helix 43
AE7
A
739 746Right-handed alpha
Helix 44
AE8
A
748 751Right-handed 310
Helix 45
AE9
A
755 759Right-handed 310
Helix 46
AF1
A
762 778Right-handed alpha
Helix 47
AF2
A
792 803Right-handed alpha
Helix 48
AF3
A
824 828Right-handed 310
Helix 49
AF4
A
844 852Right-handed alpha
Helix 50
AF5
A
853 866Right-handed alpha
Helix 51
AF6
A
964 975Right-handed alpha
Helix 52
AF7
A
975 981Right-handed alpha
Helix 53
AF8
A
983 1001Right-handed alpha
Helix 54
AF9
A
1003 1009Right-handed 310
Helix 55
AG1
A
1016 1030Right-handed alpha
Helix 56
AG2
A
1039 1053Right-handed alpha
Helix 57
AG3
A
1053 1065Right-handed alpha
Helix 58
AG4
A
1068 1075Right-handed alpha
Helix 59
AG5
A
1076 1081Right-handed alpha
Helix 60
AG6
A
1089 1111Right-handed alpha
Helix 61
AG7
A
1111 1120Right-handed alpha
Helix 62
AG8
A
1123 1154Right-handed alpha
Helix 63
AG9
A
1156 1169Right-handed alpha
Helix 64
AH1
A
1169 1177Right-handed alpha
Helix 65
AH2
A
1182 1187Right-handed alpha
Helix 66
AH3
A
1190 1202Right-handed alpha
Helix 67
AH4
A
1204 1212Right-handed alpha
Helix 68
AH5
A
1217 1222Right-handed alpha
Helix 69
AH6
A
1234 1246Right-handed alpha
Helix 70
AH7
A
1249 1265Right-handed alpha
Helix 71
AH8
A
1266 1277Right-handed alpha
Helix 72
AH9
A
1339 1348Right-handed alpha
Helix 73
AI1
A
1366 1368Right-handed 310
Helix 74
AI2
A
1369 1375Right-handed alpha
Helix 75
AI3
A
1391 1396Right-handed alpha
Helix 76
AI4
A
1402 1413Right-handed alpha
Helix 77
AI5
A
1415 1422Right-handed alpha
Helix 78
AI6
A
1424 1427Right-handed 310
Helix 79
AI7
A
1431 1435Right-handed 310
Helix 80
AI8
A
1438 1454Right-handed alpha
Helix 81
AI9
A
1468 1483Right-handed alpha
Helix 82
AJ1
A
1494 1498Right-handed 310
Helix 83
AJ2
A
1517 1524Right-handed alpha
Helix 84
AJ3
A
1526 1535Right-handed alpha
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There are 6 sheets in PDB entry 8JXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 629first strand
Strand 2
A
689 697parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
654 661anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 704first strand
Strand 2
A
781 785parallel
Strand 3
A
814 818parallel
Strand 4
A
666 670parallel
Strand 5
A
830 835parallel
Strand 6
A
838 843anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 714first strand
Strand 2
A
753 754anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1317 1324first strand
Strand 2
A
1300 1307anti-parallel
Strand 3
A
1355 1360anti-parallel
Strand 4
A
1363 1364anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1380first strand
Strand 2
A
1457 1461parallel
Strand 3
A
1487 1491parallel
Strand 4
A
1329 1334parallel
Strand 5
A
1503 1508parallel
Strand 6
A
1511 1516anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1389 1390first strand
Strand 2
A
1429 1430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il