Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXS entry

There are 5 chains in PDB entry 8JXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 22	LEU 345
B	GLN 1	HIS 124
C	GLU 39	GLU 536
H	ASP 1	LYS 220
L	ASN 1	LEU 184

There are 33 helices in PDB entry 8JXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	51	Right-handed alpha
Helix 2	AA2	A	59	77	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	95	127	Right-handed alpha
Helix 5	AA5	A	127	135	Right-handed alpha
Helix 6	AA6	A	136	161	Right-handed alpha
Helix 7	AA7	A	191	203	Right-handed alpha
Helix 8	AA8	A	203	236	Right-handed alpha
Helix 9	AA9	A	265	298	Right-handed alpha
Helix 10	AB1	A	309	332	Right-handed alpha
Helix 11	AB2	A	334	345	Right-handed alpha
Helix 12	AB3	B	86	90	Right-handed 310
Helix 13	AB4	C	43	52	Right-handed alpha
Helix 14	AB5	C	65	75	Right-handed alpha
Helix 15	AB6	C	83	90	Right-handed alpha
Helix 16	AB7	C	91	98	Right-handed alpha
Helix 17	AB8	C	129	131	Right-handed 310
Helix 18	AB9	C	132	141	Right-handed alpha
Helix 19	AC1	C	154	165	Right-handed alpha
Helix 20	AC2	C	186	202	Right-handed alpha
Helix 21	AC3	C	210	220	Right-handed alpha
Helix 22	AC4	C	229	233	Right-handed 310
Helix 23	AC5	C	316	327	Right-handed alpha
Helix 24	AC6	C	336	352	Right-handed alpha
Helix 25	AC7	C	357	370	Right-handed alpha
Helix 26	AC8	C	374	387	Right-handed alpha
Helix 27	AC9	C	391	406	Right-handed alpha
Helix 28	AD1	C	504	518	Right-handed alpha
Helix 29	AD2	H	74	76	Right-handed 310
Helix 30	AD3	H	87	91	Right-handed 310
Helix 31	AD4	H	102	107	Right-handed alpha
Helix 32	AD5	L	85	89	Right-handed 310
Helix 33	AD6	L	126	133	Right-handed alpha

There are 16 sheets in PDB entry 8JXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	67	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	114	119	parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	114	119	parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	107	110	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	108	112	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	103	104	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	228	first strand
Strand 2	C	115	118	anti-parallel
Strand 3	C	244	246	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	176	177	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	535	first strand
Strand 2	C	485	488	parallel
Strand 3	C	493	496	anti-parallel
Strand 4	H	215	218	anti-parallel
Strand 5	H	206	210	anti-parallel
Strand 6	H	160	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	148	155	anti-parallel
Strand 3	H	186	192	anti-parallel
Strand 4	H	173	180	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	76	81	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	107	112	parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	50	55	anti-parallel
Strand 6	L	59	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	107	112	parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	138	144	anti-parallel
Strand 3	L	178	183	anti-parallel
Strand 4	L	165	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXS