Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JXU entry

There is 1 chain in PDB entry 8JXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 1537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8JXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
12 18Right-handed alpha
Helix 3
AA3
A
24 29Right-handed alpha
Helix 4
AA4
A
34 54Right-handed alpha
Helix 5
AA5
A
62 90Right-handed alpha
Helix 6
AA6
A
97 121Right-handed alpha
Helix 7
AA7
A
122 124Right-handed 310
Helix 8
AA8
A
129 157Right-handed alpha
Helix 9
AA9
A
161 184Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
199 204Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
209 219Right-handed alpha
Helix 14
AB5
A
230 233Right-handed 310
Helix 15
AB6
A
234 262Right-handed alpha
Helix 16
AB7
A
309 318Right-handed alpha
Helix 17
AB8
A
319 352Right-handed alpha
Helix 18
AB9
A
356 393Right-handed alpha
Helix 19
AC1
A
394 407Right-handed alpha
Helix 20
AC2
A
408 413Right-handed alpha
Helix 21
AC3
A
416 438Right-handed alpha
Helix 22
AC4
A
439 456Right-handed alpha
Helix 23
AC5
A
462 508Right-handed alpha
Helix 24
AC6
A
509 515Right-handed alpha
Helix 25
AC7
A
517 551Right-handed alpha
Helix 26
AC8
A
552 568Right-handed alpha
Helix 27
AC9
A
573 577Right-handed 310
Helix 28
AD1
A
585 588Right-handed 310
Helix 29
AD2
A
589 618Right-handed alpha
Helix 30
AD3
A
676 685Right-handed alpha
Helix 31
AD4
A
714 721Right-handed alpha
Helix 32
AD5
A
726 737Right-handed alpha
Helix 33
AD6
A
739 746Right-handed alpha
Helix 34
AD7
A
748 752Right-handed 310
Helix 35
AD8
A
763 778Right-handed alpha
Helix 36
AD9
A
792 803Right-handed alpha
Helix 37
AE1
A
821 828Right-handed 310
Helix 38
AE2
A
844 851Right-handed alpha
Helix 39
AE3
A
853 863Right-handed alpha
Helix 40
AE4
A
963 974Right-handed alpha
Helix 41
AE5
A
975 1005Right-handed alpha
Helix 42
AE6
A
1005 1010Right-handed alpha
Helix 43
AE7
A
1020 1065Right-handed alpha
Helix 44
AE8
A
1068 1075Right-handed alpha
Helix 45
AE9
A
1076 1086Right-handed alpha
Helix 46
AF1
A
1089 1120Right-handed alpha
Helix 47
AF2
A
1122 1125Right-handed 310
Helix 48
AF3
A
1126 1146Right-handed alpha
Helix 49
AF4
A
1146 1155Right-handed alpha
Helix 50
AF5
A
1156 1169Right-handed alpha
Helix 51
AF6
A
1170 1177Right-handed alpha
Helix 52
AF7
A
1178 1229Right-handed alpha
Helix 53
AF8
A
1235 1266Right-handed alpha
Helix 54
AF9
A
1266 1276Right-handed alpha
Helix 55
AG1
A
1339 1348Right-handed alpha
Helix 56
AG2
A
1369 1375Right-handed 310
Helix 57
AG3
A
1390 1396Right-handed alpha
Helix 58
AG4
A
1402 1413Right-handed alpha
Helix 59
AG5
A
1415 1422Right-handed alpha
Helix 60
AG6
A
1431 1435Right-handed 310
Helix 61
AG7
A
1438 1454Right-handed alpha
Helix 62
AG8
A
1468 1480Right-handed alpha
Helix 63
AG9
A
1494 1498Right-handed 310
Helix 64
AH1
A
1517 1524Right-handed alpha
Helix 65
AH2
A
1526 1536Right-handed alpha
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There are 5 sheets in PDB entry 8JXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 628first strand
Strand 2
A
694 697parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
654 661anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 628first strand
Strand 2
A
694 697parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
689 690anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 704first strand
Strand 2
A
781 785parallel
Strand 3
A
814 818parallel
Strand 4
A
666 670parallel
Strand 5
A
830 834parallel
Strand 6
A
839 843anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1317 1324first strand
Strand 2
A
1300 1307anti-parallel
Strand 3
A
1355 1360anti-parallel
Strand 4
A
1363 1364anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1380first strand
Strand 2
A
1457 1461parallel
Strand 3
A
1487 1491parallel
Strand 4
A
1330 1333parallel
Strand 5
A
1503 1508parallel
Strand 6
A
1511 1516anti-parallel
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