Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXV entry

There are 5 chains in PDB entry 8JXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 3	PHE 354
C	ASN 35	ASN 340
D	SER 31	ARG 62
E	VAL 2	LEU 248
R	THR 14	ILE 372

There are 25 helices in PDB entry 8JXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	31	Right-handed alpha
Helix 2	AA2	B	212	216	Right-handed 310
Helix 3	AA3	B	242	255	Right-handed alpha
Helix 4	AA4	B	256	260	Right-handed 310
Helix 5	AA5	B	270	281	Right-handed alpha
Helix 6	AA6	B	282	286	Right-handed 310
Helix 7	AA7	B	295	309	Right-handed alpha
Helix 8	AA8	B	330	348	Right-handed alpha
Helix 9	AA9	D	32	44	Right-handed alpha
Helix 10	AB1	E	28	32	Right-handed 310
Helix 11	AB2	E	87	91	Right-handed 310
Helix 12	AB3	R	15	43	Right-handed alpha
Helix 13	AB4	R	48	63	Right-handed alpha
Helix 14	AB5	R	67	78	Right-handed alpha
Helix 15	AB6	R	83	118	Right-handed alpha
Helix 16	AB7	R	129	148	Right-handed alpha
Helix 17	AB8	R	149	151	Right-handed 310
Helix 18	AB9	R	155	159	Right-handed 310
Helix 19	AC1	R	166	170	Right-handed 310
Helix 20	AC2	R	171	181	Right-handed alpha
Helix 21	AC3	R	183	203	Right-handed alpha
Helix 22	AC4	R	294	329	Right-handed alpha
Helix 23	AC5	R	337	349	Right-handed alpha
Helix 24	AC6	R	349	362	Right-handed alpha
Helix 25	AC7	R	362	372	Right-handed alpha

There are 13 sheets in PDB entry 8JXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	220	226	parallel
Strand 5	B	264	269	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	156	160	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	241	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	306	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	187	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	239	240	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	161	first strand
Strand 2	E	212	217	anti-parallel
Strand 3	E	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXV