Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXX entry

There are 5 chains in PDB entry 8JXX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 14	ILE 372
B	CYS 3	LEU 353
C	LEU 4	ASN 340
D	SER 8	ARG 62
E	VAL 2	GLU 247

There are 31 helices in PDB entry 8JXX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	14	43	Right-handed alpha
Helix 2	AA2	R	48	63	Right-handed alpha
Helix 3	AA3	R	64	66	Right-handed 310
Helix 4	AA4	R	67	78	Right-handed alpha
Helix 5	AA5	R	83	118	Right-handed alpha
Helix 6	AA6	R	118	124	Right-handed alpha
Helix 7	AA7	R	129	146	Right-handed alpha
Helix 8	AA8	R	147	153	Right-handed alpha
Helix 9	AA9	R	166	170	Right-handed 310
Helix 10	AB1	R	171	203	Right-handed alpha
Helix 11	AB2	R	294	330	Right-handed alpha
Helix 12	AB3	R	337	349	Right-handed alpha
Helix 13	AB4	R	349	362	Right-handed alpha
Helix 14	AB5	R	363	371	Right-handed alpha
Helix 15	AB6	B	6	30	Right-handed alpha
Helix 16	AB7	B	45	53	Right-handed alpha
Helix 17	AB8	B	207	216	Right-handed 310
Helix 18	AB9	B	241	255	Right-handed alpha
Helix 19	AC1	B	256	260	Right-handed 310
Helix 20	AC2	B	270	278	Right-handed alpha
Helix 21	AC3	B	282	286	Right-handed 310
Helix 22	AC4	B	295	309	Right-handed alpha
Helix 23	AC5	B	329	351	Right-handed alpha
Helix 24	AC6	C	5	25	Right-handed alpha
Helix 25	AC7	C	29	33	Right-handed 310
Helix 26	AC8	D	9	24	Right-handed alpha
Helix 27	AC9	D	29	44	Right-handed alpha
Helix 28	AD1	D	45	48	Right-handed 310
Helix 29	AD2	D	55	59	Right-handed 310
Helix 30	AD3	E	28	32	Right-handed 310
Helix 31	AD4	E	87	91	Right-handed 310

There are 12 sheets in PDB entry 8JXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	220	226	parallel
Strand 5	B	264	269	parallel
Strand 6	B	319	320	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	120	125	anti-parallel
Strand 4	C	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	153	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	306	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	15	24	anti-parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	143	first strand
Strand 2	E	155	162	anti-parallel
Strand 3	E	212	218	anti-parallel
Strand 4	E	204	209	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	187	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXX