Analysis of interatomic Contacts of Structural Units in PDB entry:
8JY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JY1 entry

There are 2 chains in PDB entry 8JY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 319
B
 ILE 4LYS 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8JY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 39Right-handed 310
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
75 91Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
138 148Right-handed alpha
Helix 7
AA7
A
151 156Right-handed alpha
Helix 8
AA8
A
160 170Right-handed alpha
Helix 9
AA9
A
170 180Right-handed alpha
Helix 10
AB1
A
210 222Right-handed alpha
Helix 11
AB2
A
225 234Right-handed alpha
Helix 12
AB3
A
234 242Right-handed alpha
Helix 13
AB4
A
243 246Right-handed 310
Helix 14
AB5
A
262 267Right-handed 310
Helix 15
AB6
A
269 276Right-handed alpha
Helix 16
AB7
A
277 283Right-handed alpha
Helix 17
AB8
A
298 303Right-handed alpha
Helix 18
AB9
A
303 316Right-handed alpha
Helix 19
AC1
A
317 319Right-handed 310
Helix 20
AC2
B
36 39Right-handed 310
Helix 21
AC3
B
40 50Right-handed alpha
Helix 22
AC4
B
70 74Right-handed 310
Helix 23
AC5
B
75 91Right-handed alpha
Helix 24
AC6
B
103 116Right-handed alpha
Helix 25
AC7
B
227 233Right-handed alpha
Helix 26
AC8
B
234 242Right-handed alpha
Helix 27
AC9
B
243 246Right-handed 310
Helix 28
AD1
B
263 267Right-handed 310
Helix 29
AD2
B
269 276Right-handed alpha
Helix 30
AD3
B
277 283Right-handed alpha
Helix 31
AD4
B
298 303Right-handed alpha
Helix 32
AD5
B
303 317Right-handed alpha
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There are 2 sheets in PDB entry 8JY1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
26 30parallel
Strand 5
A
97 102parallel
Strand 6
A
120 126parallel
Strand 7
A
254 259parallel
Strand 8
A
286 292parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
14 22anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
26 30parallel
Strand 5
B
97 102parallel
Strand 6
B
120 126parallel
Strand 7
B
254 259parallel
Strand 8
B
286 292parallel
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