Analysis of interatomic Contacts of Structural Units in PDB entry:
8JY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JY4 entry

There is 1 chain in PDB entry 8JY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8JY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
24 31Right-handed alpha
Helix 3
AA3
A
33 44Right-handed alpha
Helix 4
AA4
A
45 54Right-handed alpha
Helix 5
AA5
A
62 88Right-handed alpha
Helix 6
AA6
A
97 121Right-handed alpha
Helix 7
AA7
A
129 157Right-handed alpha
Helix 8
AA8
A
161 184Right-handed alpha
Helix 9
AA9
A
199 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
209 216Right-handed alpha
Helix 12
AB3
A
222 226Right-handed 310
Helix 13
AB4
A
234 266Right-handed alpha
Helix 14
AB5
A
309 334Right-handed alpha
Helix 15
AB6
A
337 351Right-handed alpha
Helix 16
AB7
A
356 405Right-handed alpha
Helix 17
AB8
A
408 413Right-handed alpha
Helix 18
AB9
A
416 423Right-handed alpha
Helix 19
AC1
A
429 437Right-handed alpha
Helix 20
AC2
A
438 441Right-handed 310
Helix 21
AC3
A
442 460Right-handed alpha
Helix 22
AC4
A
462 508Right-handed alpha
Helix 23
AC5
A
508 515Right-handed alpha
Helix 24
AC6
A
517 552Right-handed alpha
Helix 25
AC7
A
552 569Right-handed alpha
Helix 26
AC8
A
575 581Right-handed alpha
Helix 27
AC9
A
582 618Right-handed alpha
Helix 28
AD1
A
678 686Right-handed alpha
Helix 29
AD2
A
714 721Right-handed alpha
Helix 30
AD3
A
726 737Right-handed alpha
Helix 31
AD4
A
738 746Right-handed alpha
Helix 32
AD5
A
762 778Right-handed alpha
Helix 33
AD6
A
792 803Right-handed alpha
Helix 34
AD7
A
824 828Right-handed 310
Helix 35
AD8
A
848 852Right-handed 310
Helix 36
AD9
A
964 975Right-handed alpha
Helix 37
AE1
A
975 1005Right-handed alpha
Helix 38
AE2
A
1006 1009Right-handed 310
Helix 39
AE3
A
1016 1065Right-handed alpha
Helix 40
AE4
A
1068 1075Right-handed alpha
Helix 41
AE5
A
1076 1084Right-handed alpha
Helix 42
AE6
A
1086 1094Right-handed alpha
Helix 43
AE7
A
1094 1118Right-handed alpha
Helix 44
AE8
A
1122 1168Right-handed alpha
Helix 45
AE9
A
1169 1177Right-handed alpha
Helix 46
AF1
A
1178 1213Right-handed alpha
Helix 47
AF2
A
1213 1229Right-handed alpha
Helix 48
AF3
A
1236 1246Right-handed alpha
Helix 49
AF4
A
1247 1266Right-handed alpha
Helix 50
AF5
A
1266 1277Right-handed alpha
Helix 51
AF6
A
1339 1348Right-handed alpha
Helix 52
AF7
A
1366 1368Right-handed 310
Helix 53
AF8
A
1369 1375Right-handed alpha
Helix 54
AF9
A
1391 1396Right-handed alpha
Helix 55
AG1
A
1402 1413Right-handed alpha
Helix 56
AG2
A
1415 1422Right-handed alpha
Helix 57
AG3
A
1424 1427Right-handed 310
Helix 58
AG4
A
1431 1435Right-handed 310
Helix 59
AG5
A
1438 1454Right-handed alpha
Helix 60
AG6
A
1468 1483Right-handed alpha
Helix 61
AG7
A
1494 1498Right-handed 310
Helix 62
AG8
A
1517 1524Right-handed alpha
Helix 63
AG9
A
1526 1533Right-handed alpha
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There are 6 sheets in PDB entry 8JY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 629first strand
Strand 2
A
695 697parallel
Strand 3
A
638 639anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 657first strand
Strand 2
A
642 645anti-parallel
Strand 3
A
689 692anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 703first strand
Strand 2
A
781 783parallel
Strand 3
A
814 818parallel
Strand 4
A
666 670parallel
Strand 5
A
830 833parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1317 1324first strand
Strand 2
A
1300 1307anti-parallel
Strand 3
A
1355 1360anti-parallel
Strand 4
A
1363 1364anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1380first strand
Strand 2
A
1457 1461parallel
Strand 3
A
1487 1491parallel
Strand 4
A
1329 1334parallel
Strand 5
A
1503 1508parallel
Strand 6
A
1511 1516anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1389 1390first strand
Strand 2
A
1429 1430anti-parallel
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