Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JYA entry

There are 2 chains in PDB entry 8JYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 323ALA 513
B
 GLY 323ALA 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8JYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
323 337Right-handed alpha
Helix 2
AA2
A
345 349Right-handed 310
Helix 3
AA3
A
425 428Right-handed 310
Helix 4
AA4
B
324 337Right-handed alpha
Helix 5
AA5
B
345 349Right-handed 310
Helix 6
AA6
B
425 428Right-handed 310
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There are 6 sheets in PDB entry 8JYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
394 400parallel
Strand 3
A
508 510anti-parallel
Strand 4
A
361 364anti-parallel
Strand 5
A
353 355anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
394 400parallel
Strand 3
A
459 465anti-parallel
Strand 4
A
470 475anti-parallel
Strand 5
A
481 484anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
494 499anti-parallel
Strand 3
A
407 413anti-parallel
Strand 4
A
430 436anti-parallel
Strand 5
A
440 443anti-parallel
Strand 6
A
449 450anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
394 400parallel
Strand 3
B
508 510anti-parallel
Strand 4
B
361 364anti-parallel
Strand 5
B
353 355anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
394 400parallel
Strand 3
B
459 465anti-parallel
Strand 4
B
470 475anti-parallel
Strand 5
B
481 484anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 385first strand
Strand 2
B
494 499anti-parallel
Strand 3
B
407 413anti-parallel
Strand 4
B
430 436anti-parallel
Strand 5
B
440 443anti-parallel
Strand 6
B
449 450anti-parallel
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