Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JYC entry

There are 4 chains in PDB entry 8JYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 322	VAL 521
B	ARG 322	ARG 520
C	GLU 301	LEU 484
D	ALA 305	PRO 482

There are 9 helices in PDB entry 8JYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	333	337	Right-handed 310
Helix 2	AA2	A	416	419	Right-handed 310
Helix 3	AA3	B	333	337	Right-handed 310
Helix 4	AA4	B	416	419	Right-handed 310
Helix 5	AA5	B	457	459	Right-handed 310
Helix 6	AA6	C	303	307	Right-handed 310
Helix 7	AA7	C	315	319	Right-handed 310
Helix 8	AA8	C	395	398	Right-handed 310
Helix 9	AA9	D	395	398	Right-handed 310

There are 10 sheets in PDB entry 8JYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	349	352	anti-parallel
Strand 3	A	497	500	anti-parallel
Strand 4	A	385	391	anti-parallel
Strand 5	A	325	327	parallel
Strand 6	B	325	327	anti-parallel
Strand 7	B	385	391	parallel
Strand 8	B	497	499	anti-parallel
Strand 9	B	349	352	anti-parallel
Strand 10	B	341	343	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	B	470	474	anti-parallel
Strand 3	B	460	465	anti-parallel
Strand 4	B	449	455	anti-parallel
Strand 5	B	385	391	anti-parallel
Strand 6	B	325	327	parallel
Strand 7	A	325	327	anti-parallel
Strand 8	A	385	391	parallel
Strand 9	A	449	455	anti-parallel
Strand 10	A	460	465	anti-parallel
Strand 11	A	470	474	anti-parallel
Strand 12	B	516	517	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	484	490	anti-parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	421	427	anti-parallel
Strand 5	A	430	433	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	484	490	anti-parallel
Strand 3	B	398	404	anti-parallel
Strand 4	B	421	427	anti-parallel
Strand 5	B	430	433	anti-parallel
Strand 6	B	440	441	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	370	parallel
Strand 3	C	478	480	anti-parallel
Strand 4	C	331	334	anti-parallel
Strand 5	C	323	325	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	370	parallel
Strand 3	C	429	435	anti-parallel
Strand 4	C	440	445	anti-parallel
Strand 5	C	451	455	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	355	first strand
Strand 2	C	464	469	anti-parallel
Strand 3	C	377	383	anti-parallel
Strand 4	C	400	406	anti-parallel
Strand 5	C	410	413	anti-parallel
Strand 6	C	419	420	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	364	370	parallel
Strand 3	D	478	480	anti-parallel
Strand 4	D	331	334	anti-parallel
Strand 5	D	323	325	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	364	370	parallel
Strand 3	D	429	435	anti-parallel
Strand 4	D	440	445	anti-parallel
Strand 5	D	451	455	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	355	first strand
Strand 2	D	464	469	anti-parallel
Strand 3	D	377	383	anti-parallel
Strand 4	D	400	406	anti-parallel
Strand 5	D	410	413	anti-parallel
Strand 6	D	419	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYC