Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JYL entry

There are 6 chains in PDB entry 8JYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	HIS 532
B	ASN 6	HIS 532
C	ASN 6	HIS 532
D	ASN 6	HIS 532
E	ASN 6	HIS 532
F	ASN 6	HIS 532

There are132 helices in PDB entry 8JYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	21	Right-handed alpha
Helix 2	AA2	A	41	58	Right-handed alpha
Helix 3	AA3	A	73	86	Right-handed alpha
Helix 4	AA4	A	98	110	Right-handed alpha
Helix 5	AA5	A	120	128	Right-handed alpha
Helix 6	AA6	A	129	131	Right-handed 310
Helix 7	AA7	A	146	154	Right-handed alpha
Helix 8	AA8	A	189	204	Right-handed alpha
Helix 9	AA9	A	226	230	Right-handed 310
Helix 10	AB1	A	231	240	Right-handed alpha
Helix 11	AB2	A	250	262	Right-handed alpha
Helix 12	AB3	A	269	279	Right-handed alpha
Helix 13	AB4	A	280	285	Right-handed 310
Helix 14	AB5	A	300	310	Right-handed alpha
Helix 15	AB6	A	335	339	Right-handed 310
Helix 16	AB7	A	340	349	Right-handed alpha
Helix 17	AB8	A	395	402	Right-handed alpha
Helix 18	AB9	A	403	406	Right-handed 310
Helix 19	AC1	A	440	449	Right-handed alpha
Helix 20	AC2	A	483	497	Right-handed alpha
Helix 21	AC3	A	501	507	Right-handed 310
Helix 22	AC4	A	524	532	Right-handed alpha
Helix 23	AC5	B	14	21	Right-handed alpha
Helix 24	AC6	B	41	58	Right-handed alpha
Helix 25	AC7	B	73	86	Right-handed alpha
Helix 26	AC8	B	98	110	Right-handed alpha
Helix 27	AC9	B	120	128	Right-handed alpha
Helix 28	AD1	B	129	131	Right-handed 310
Helix 29	AD2	B	146	154	Right-handed alpha
Helix 30	AD3	B	189	204	Right-handed alpha
Helix 31	AD4	B	226	230	Right-handed 310
Helix 32	AD5	B	231	240	Right-handed alpha
Helix 33	AD6	B	250	262	Right-handed alpha
Helix 34	AD7	B	269	279	Right-handed alpha
Helix 35	AD8	B	280	285	Right-handed 310
Helix 36	AD9	B	300	310	Right-handed alpha
Helix 37	AE1	B	335	339	Right-handed 310
Helix 38	AE2	B	340	349	Right-handed alpha
Helix 39	AE3	B	395	402	Right-handed alpha
Helix 40	AE4	B	403	406	Right-handed 310
Helix 41	AE5	B	440	449	Right-handed alpha
Helix 42	AE6	B	483	497	Right-handed alpha
Helix 43	AE7	B	501	507	Right-handed 310
Helix 44	AE8	B	524	532	Right-handed alpha
Helix 45	AE9	C	14	21	Right-handed alpha
Helix 46	AF1	C	41	58	Right-handed alpha
Helix 47	AF2	C	73	86	Right-handed alpha
Helix 48	AF3	C	98	110	Right-handed alpha
Helix 49	AF4	C	120	128	Right-handed alpha
Helix 50	AF5	C	129	131	Right-handed 310
Helix 51	AF6	C	146	154	Right-handed alpha
Helix 52	AF7	C	189	204	Right-handed alpha
Helix 53	AF8	C	226	230	Right-handed 310
Helix 54	AF9	C	231	240	Right-handed alpha
Helix 55	AG1	C	250	262	Right-handed alpha
Helix 56	AG2	C	269	279	Right-handed alpha
Helix 57	AG3	C	280	285	Right-handed 310
Helix 58	AG4	C	300	310	Right-handed alpha
Helix 59	AG5	C	335	339	Right-handed 310
Helix 60	AG6	C	340	349	Right-handed alpha
Helix 61	AG7	C	395	402	Right-handed alpha
Helix 62	AG8	C	403	406	Right-handed 310
Helix 63	AG9	C	440	449	Right-handed alpha
Helix 64	AH1	C	483	497	Right-handed alpha
Helix 65	AH2	C	501	507	Right-handed 310
Helix 66	AH3	C	524	532	Right-handed alpha
Helix 67	AH4	D	14	21	Right-handed alpha
Helix 68	AH5	D	41	58	Right-handed alpha
Helix 69	AH6	D	73	86	Right-handed alpha
Helix 70	AH7	D	98	110	Right-handed alpha
Helix 71	AH8	D	120	128	Right-handed alpha
Helix 72	AH9	D	129	131	Right-handed 310
Helix 73	AI1	D	146	154	Right-handed alpha
Helix 74	AI2	D	189	204	Right-handed alpha
Helix 75	AI3	D	226	230	Right-handed 310
Helix 76	AI4	D	231	240	Right-handed alpha
Helix 77	AI5	D	250	262	Right-handed alpha
Helix 78	AI6	D	269	279	Right-handed alpha
Helix 79	AI7	D	280	285	Right-handed 310
Helix 80	AI8	D	300	310	Right-handed alpha
Helix 81	AI9	D	335	339	Right-handed 310
Helix 82	AJ1	D	340	349	Right-handed alpha
Helix 83	AJ2	D	395	402	Right-handed alpha
Helix 84	AJ3	D	403	406	Right-handed 310
Helix 85	AJ4	D	440	449	Right-handed alpha
Helix 86	AJ5	D	483	497	Right-handed alpha
Helix 87	AJ6	D	501	507	Right-handed 310
Helix 88	AJ7	D	524	532	Right-handed alpha
Helix 89	AJ8	E	14	21	Right-handed alpha
Helix 90	AJ9	E	41	58	Right-handed alpha
Helix 91	AK1	E	73	86	Right-handed alpha
Helix 92	AK2	E	98	110	Right-handed alpha
Helix 93	AK3	E	120	128	Right-handed alpha
Helix 94	AK4	E	129	131	Right-handed 310
Helix 95	AK5	E	146	154	Right-handed alpha
Helix 96	AK6	E	189	204	Right-handed alpha
Helix 97	AK7	E	226	230	Right-handed 310
Helix 98	AK8	E	231	240	Right-handed alpha
Helix 99	AK9	E	250	262	Right-handed alpha
Helix 100	AL1	E	269	279	Right-handed alpha
Helix 101	AL2	E	280	285	Right-handed 310
Helix 102	AL3	E	300	310	Right-handed alpha
Helix 103	AL4	E	335	339	Right-handed 310
Helix 104	AL5	E	340	349	Right-handed alpha
Helix 105	AL6	E	395	402	Right-handed alpha
Helix 106	AL7	E	403	406	Right-handed 310
Helix 107	AL8	E	440	449	Right-handed alpha
Helix 108	AL9	E	483	497	Right-handed alpha
Helix 109	AM1	E	501	507	Right-handed 310
Helix 110	AM2	E	524	532	Right-handed alpha
Helix 111	AM3	F	14	21	Right-handed alpha
Helix 112	AM4	F	41	58	Right-handed alpha
Helix 113	AM5	F	73	86	Right-handed alpha
Helix 114	AM6	F	98	110	Right-handed alpha
Helix 115	AM7	F	120	128	Right-handed alpha
Helix 116	AM8	F	129	131	Right-handed 310
Helix 117	AM9	F	146	154	Right-handed alpha
Helix 118	AN1	F	189	204	Right-handed alpha
Helix 119	AN2	F	226	230	Right-handed 310
Helix 120	AN3	F	231	240	Right-handed alpha
Helix 121	AN4	F	250	262	Right-handed alpha
Helix 122	AN5	F	269	279	Right-handed alpha
Helix 123	AN6	F	280	285	Right-handed 310
Helix 124	AN7	F	300	310	Right-handed alpha
Helix 125	AN8	F	335	339	Right-handed 310
Helix 126	AN9	F	340	349	Right-handed alpha
Helix 127	AO1	F	395	402	Right-handed alpha
Helix 128	AO2	F	403	406	Right-handed 310
Helix 129	AO3	F	440	449	Right-handed alpha
Helix 130	AO4	F	483	497	Right-handed alpha
Helix 131	AO5	F	501	507	Right-handed 310
Helix 132	AO6	F	524	532	Right-handed alpha

There are 30 sheets in PDB entry 8JYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	242	245	parallel
Strand 4	A	217	220	parallel
Strand 5	A	265	268	parallel
Strand 6	A	291	294	parallel
Strand 7	A	313	319	parallel
Strand 8	A	326	329	anti-parallel
Strand 9	A	353	354	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	113	117	parallel
Strand 3	A	65	69	parallel
Strand 4	A	89	92	parallel
Strand 5	A	169	175	parallel
Strand 6	A	183	188	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	363	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	407	415	anti-parallel
Strand 4	A	421	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	436	439	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	463	first strand
Strand 2	A	467	475	anti-parallel
Strand 3	A	508	511	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	30	33	anti-parallel
Strand 3	B	242	245	parallel
Strand 4	B	217	220	parallel
Strand 5	B	265	268	parallel
Strand 6	B	291	294	parallel
Strand 7	B	313	319	parallel
Strand 8	B	326	329	anti-parallel
Strand 9	B	353	354	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	113	117	parallel
Strand 3	B	65	69	parallel
Strand 4	B	89	92	parallel
Strand 5	B	169	175	parallel
Strand 6	B	183	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	363	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	407	415	anti-parallel
Strand 4	B	421	426	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	436	439	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	463	first strand
Strand 2	B	467	475	anti-parallel
Strand 3	B	508	511	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	30	33	anti-parallel
Strand 3	C	242	245	parallel
Strand 4	C	217	220	parallel
Strand 5	C	265	268	parallel
Strand 6	C	291	294	parallel
Strand 7	C	313	319	parallel
Strand 8	C	326	329	anti-parallel
Strand 9	C	353	354	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	113	117	parallel
Strand 3	C	65	69	parallel
Strand 4	C	89	92	parallel
Strand 5	C	169	175	parallel
Strand 6	C	183	188	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	363	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	407	415	anti-parallel
Strand 4	C	421	426	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	433	first strand
Strand 2	C	436	439	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	463	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	508	511	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	242	245	parallel
Strand 4	D	217	220	parallel
Strand 5	D	265	268	parallel
Strand 6	D	291	294	parallel
Strand 7	D	313	319	parallel
Strand 8	D	326	329	anti-parallel
Strand 9	D	353	354	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	113	117	parallel
Strand 3	D	65	69	parallel
Strand 4	D	89	92	parallel
Strand 5	D	169	175	parallel
Strand 6	D	183	188	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	363	first strand
Strand 2	D	378	383	anti-parallel
Strand 3	D	407	415	anti-parallel
Strand 4	D	421	426	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	433	first strand
Strand 2	D	436	439	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	463	first strand
Strand 2	D	467	475	anti-parallel
Strand 3	D	508	511	parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	40	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	242	245	parallel
Strand 4	E	217	220	parallel
Strand 5	E	265	268	parallel
Strand 6	E	291	294	parallel
Strand 7	E	313	319	parallel
Strand 8	E	326	329	anti-parallel
Strand 9	E	353	354	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	113	117	parallel
Strand 3	E	65	69	parallel
Strand 4	E	89	92	parallel
Strand 5	E	169	175	parallel
Strand 6	E	183	188	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	363	first strand
Strand 2	E	378	383	anti-parallel
Strand 3	E	407	415	anti-parallel
Strand 4	E	421	426	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	433	first strand
Strand 2	E	436	439	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	463	first strand
Strand 2	E	467	475	anti-parallel
Strand 3	E	508	511	parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	40	first strand
Strand 2	F	30	33	anti-parallel
Strand 3	F	242	245	parallel
Strand 4	F	217	220	parallel
Strand 5	F	265	268	parallel
Strand 6	F	291	294	parallel
Strand 7	F	313	319	parallel
Strand 8	F	326	329	anti-parallel
Strand 9	F	353	354	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	113	117	parallel
Strand 3	F	65	69	parallel
Strand 4	F	89	92	parallel
Strand 5	F	169	175	parallel
Strand 6	F	183	188	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	363	first strand
Strand 2	F	378	383	anti-parallel
Strand 3	F	407	415	anti-parallel
Strand 4	F	421	426	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	433	first strand
Strand 2	F	436	439	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	463	first strand
Strand 2	F	467	475	anti-parallel
Strand 3	F	508	511	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYL