Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JYU entry

There are 6 chains in PDB entry 8JYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 4	LEU 533
D	TYR 4	LEU 533
B	TYR 4	LEU 533
C	TYR 4	LEU 533
E	TYR 4	LEU 533
F	TYR 4	LEU 533

There are138 helices in PDB entry 8JYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	21	Right-handed alpha
Helix 2	AA2	A	41	58	Right-handed alpha
Helix 3	AA3	A	73	86	Right-handed alpha
Helix 4	AA4	A	98	110	Right-handed alpha
Helix 5	AA5	A	120	128	Right-handed alpha
Helix 6	AA6	A	129	131	Right-handed 310
Helix 7	AA7	A	146	154	Right-handed alpha
Helix 8	AA8	A	189	203	Right-handed alpha
Helix 9	AA9	A	226	231	Right-handed alpha
Helix 10	AB1	A	231	240	Right-handed alpha
Helix 11	AB2	A	250	262	Right-handed alpha
Helix 12	AB3	A	269	279	Right-handed alpha
Helix 13	AB4	A	280	283	Right-handed 310
Helix 14	AB5	A	300	309	Right-handed alpha
Helix 15	AB6	A	321	324	Right-handed 310
Helix 16	AB7	A	333	338	Right-handed alpha
Helix 17	AB8	A	340	349	Right-handed alpha
Helix 18	AB9	A	395	402	Right-handed alpha
Helix 19	AC1	A	403	406	Right-handed 310
Helix 20	AC2	A	439	448	Right-handed alpha
Helix 21	AC3	A	483	492	Right-handed alpha
Helix 22	AC4	A	503	508	Right-handed alpha
Helix 23	AC5	A	524	531	Right-handed alpha
Helix 24	AC6	D	14	21	Right-handed alpha
Helix 25	AC7	D	41	58	Right-handed alpha
Helix 26	AC8	D	73	86	Right-handed alpha
Helix 27	AC9	D	98	110	Right-handed alpha
Helix 28	AD1	D	120	128	Right-handed alpha
Helix 29	AD2	D	129	131	Right-handed 310
Helix 30	AD3	D	146	154	Right-handed alpha
Helix 31	AD4	D	189	203	Right-handed alpha
Helix 32	AD5	D	226	231	Right-handed alpha
Helix 33	AD6	D	231	240	Right-handed alpha
Helix 34	AD7	D	250	262	Right-handed alpha
Helix 35	AD8	D	269	279	Right-handed alpha
Helix 36	AD9	D	280	283	Right-handed 310
Helix 37	AE1	D	300	309	Right-handed alpha
Helix 38	AE2	D	321	324	Right-handed 310
Helix 39	AE3	D	333	338	Right-handed alpha
Helix 40	AE4	D	340	349	Right-handed alpha
Helix 41	AE5	D	395	402	Right-handed alpha
Helix 42	AE6	D	403	406	Right-handed 310
Helix 43	AE7	D	439	448	Right-handed alpha
Helix 44	AE8	D	483	492	Right-handed alpha
Helix 45	AE9	D	503	508	Right-handed alpha
Helix 46	AF1	D	524	531	Right-handed alpha
Helix 47	AF2	B	14	21	Right-handed alpha
Helix 48	AF3	B	41	58	Right-handed alpha
Helix 49	AF4	B	73	86	Right-handed alpha
Helix 50	AF5	B	98	110	Right-handed alpha
Helix 51	AF6	B	120	128	Right-handed alpha
Helix 52	AF7	B	129	131	Right-handed 310
Helix 53	AF8	B	146	154	Right-handed alpha
Helix 54	AF9	B	189	203	Right-handed alpha
Helix 55	AG1	B	226	231	Right-handed alpha
Helix 56	AG2	B	231	240	Right-handed alpha
Helix 57	AG3	B	250	262	Right-handed alpha
Helix 58	AG4	B	269	279	Right-handed alpha
Helix 59	AG5	B	280	283	Right-handed 310
Helix 60	AG6	B	300	309	Right-handed alpha
Helix 61	AG7	B	321	324	Right-handed 310
Helix 62	AG8	B	333	338	Right-handed alpha
Helix 63	AG9	B	340	349	Right-handed alpha
Helix 64	AH1	B	395	402	Right-handed alpha
Helix 65	AH2	B	403	406	Right-handed 310
Helix 66	AH3	B	439	448	Right-handed alpha
Helix 67	AH4	B	483	492	Right-handed alpha
Helix 68	AH5	B	503	508	Right-handed alpha
Helix 69	AH6	B	524	531	Right-handed alpha
Helix 70	AH7	C	14	21	Right-handed alpha
Helix 71	AH8	C	41	58	Right-handed alpha
Helix 72	AH9	C	73	86	Right-handed alpha
Helix 73	AI1	C	98	110	Right-handed alpha
Helix 74	AI2	C	120	128	Right-handed alpha
Helix 75	AI3	C	129	131	Right-handed 310
Helix 76	AI4	C	146	154	Right-handed alpha
Helix 77	AI5	C	189	203	Right-handed alpha
Helix 78	AI6	C	226	231	Right-handed alpha
Helix 79	AI7	C	231	240	Right-handed alpha
Helix 80	AI8	C	250	262	Right-handed alpha
Helix 81	AI9	C	269	279	Right-handed alpha
Helix 82	AJ1	C	280	283	Right-handed 310
Helix 83	AJ2	C	300	309	Right-handed alpha
Helix 84	AJ3	C	321	324	Right-handed 310
Helix 85	AJ4	C	333	338	Right-handed alpha
Helix 86	AJ5	C	340	349	Right-handed alpha
Helix 87	AJ6	C	395	402	Right-handed alpha
Helix 88	AJ7	C	403	406	Right-handed 310
Helix 89	AJ8	C	439	448	Right-handed alpha
Helix 90	AJ9	C	483	492	Right-handed alpha
Helix 91	AK1	C	503	508	Right-handed alpha
Helix 92	AK2	C	524	531	Right-handed alpha
Helix 93	AK3	E	14	21	Right-handed alpha
Helix 94	AK4	E	41	58	Right-handed alpha
Helix 95	AK5	E	73	86	Right-handed alpha
Helix 96	AK6	E	98	110	Right-handed alpha
Helix 97	AK7	E	120	128	Right-handed alpha
Helix 98	AK8	E	129	131	Right-handed 310
Helix 99	AK9	E	146	154	Right-handed alpha
Helix 100	AL1	E	189	203	Right-handed alpha
Helix 101	AL2	E	226	231	Right-handed alpha
Helix 102	AL3	E	231	240	Right-handed alpha
Helix 103	AL4	E	250	262	Right-handed alpha
Helix 104	AL5	E	269	279	Right-handed alpha
Helix 105	AL6	E	280	283	Right-handed 310
Helix 106	AL7	E	300	309	Right-handed alpha
Helix 107	AL8	E	321	324	Right-handed 310
Helix 108	AL9	E	333	338	Right-handed alpha
Helix 109	AM1	E	340	349	Right-handed alpha
Helix 110	AM2	E	395	402	Right-handed alpha
Helix 111	AM3	E	403	406	Right-handed 310
Helix 112	AM4	E	439	448	Right-handed alpha
Helix 113	AM5	E	483	492	Right-handed alpha
Helix 114	AM6	E	503	508	Right-handed alpha
Helix 115	AM7	E	524	531	Right-handed alpha
Helix 116	AM8	F	14	21	Right-handed alpha
Helix 117	AM9	F	41	58	Right-handed alpha
Helix 118	AN1	F	73	86	Right-handed alpha
Helix 119	AN2	F	98	110	Right-handed alpha
Helix 120	AN3	F	120	128	Right-handed alpha
Helix 121	AN4	F	129	131	Right-handed 310
Helix 122	AN5	F	146	154	Right-handed alpha
Helix 123	AN6	F	189	203	Right-handed alpha
Helix 124	AN7	F	226	231	Right-handed alpha
Helix 125	AN8	F	231	240	Right-handed alpha
Helix 126	AN9	F	250	262	Right-handed alpha
Helix 127	AO1	F	269	279	Right-handed alpha
Helix 128	AO2	F	280	283	Right-handed 310
Helix 129	AO3	F	300	309	Right-handed alpha
Helix 130	AO4	F	321	324	Right-handed 310
Helix 131	AO5	F	333	338	Right-handed alpha
Helix 132	AO6	F	340	349	Right-handed alpha
Helix 133	AO7	F	395	402	Right-handed alpha
Helix 134	AO8	F	403	406	Right-handed 310
Helix 135	AO9	F	439	448	Right-handed alpha
Helix 136	AP1	F	483	492	Right-handed alpha
Helix 137	AP2	F	503	508	Right-handed alpha
Helix 138	AP3	F	524	531	Right-handed alpha

There are 36 sheets in PDB entry 8JYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	242	245	parallel
Strand 4	A	217	220	parallel
Strand 5	A	265	268	parallel
Strand 6	A	291	294	parallel
Strand 7	A	313	319	parallel
Strand 8	A	326	329	anti-parallel
Strand 9	A	353	354	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	113	117	parallel
Strand 3	A	65	69	parallel
Strand 4	A	89	92	parallel
Strand 5	A	169	175	parallel
Strand 6	A	183	188	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	363	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	407	415	anti-parallel
Strand 4	A	421	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	433	first strand
Strand 2	A	436	438	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	A	472	476	anti-parallel
Strand 3	A	510	511	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	467	469	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	242	245	parallel
Strand 4	D	217	220	parallel
Strand 5	D	265	268	parallel
Strand 6	D	291	294	parallel
Strand 7	D	313	319	parallel
Strand 8	D	326	329	anti-parallel
Strand 9	D	353	354	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	113	117	parallel
Strand 3	D	65	69	parallel
Strand 4	D	89	92	parallel
Strand 5	D	169	175	parallel
Strand 6	D	183	188	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	363	first strand
Strand 2	D	378	383	anti-parallel
Strand 3	D	407	415	anti-parallel
Strand 4	D	421	426	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	436	438	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	458	first strand
Strand 2	D	472	476	anti-parallel
Strand 3	D	510	511	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	463	first strand
Strand 2	D	467	469	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	30	33	anti-parallel
Strand 3	B	242	245	parallel
Strand 4	B	217	220	parallel
Strand 5	B	265	268	parallel
Strand 6	B	291	294	parallel
Strand 7	B	313	319	parallel
Strand 8	B	326	329	anti-parallel
Strand 9	B	353	354	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	113	117	parallel
Strand 3	B	65	69	parallel
Strand 4	B	89	92	parallel
Strand 5	B	169	175	parallel
Strand 6	B	183	188	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	363	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	407	415	anti-parallel
Strand 4	B	421	426	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	433	first strand
Strand 2	B	436	438	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	458	first strand
Strand 2	B	472	476	anti-parallel
Strand 3	B	510	511	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	467	469	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	30	33	anti-parallel
Strand 3	C	242	245	parallel
Strand 4	C	217	220	parallel
Strand 5	C	265	268	parallel
Strand 6	C	291	294	parallel
Strand 7	C	313	319	parallel
Strand 8	C	326	329	anti-parallel
Strand 9	C	353	354	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	113	117	parallel
Strand 3	C	65	69	parallel
Strand 4	C	89	92	parallel
Strand 5	C	169	175	parallel
Strand 6	C	183	188	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	363	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	407	415	anti-parallel
Strand 4	C	421	426	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	433	first strand
Strand 2	C	436	438	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	458	first strand
Strand 2	C	472	476	anti-parallel
Strand 3	C	510	511	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	C	467	469	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	40	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	242	245	parallel
Strand 4	E	217	220	parallel
Strand 5	E	265	268	parallel
Strand 6	E	291	294	parallel
Strand 7	E	313	319	parallel
Strand 8	E	326	329	anti-parallel
Strand 9	E	353	354	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	113	117	parallel
Strand 3	E	65	69	parallel
Strand 4	E	89	92	parallel
Strand 5	E	169	175	parallel
Strand 6	E	183	188	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	363	first strand
Strand 2	E	378	383	anti-parallel
Strand 3	E	407	415	anti-parallel
Strand 4	E	421	426	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	431	433	first strand
Strand 2	E	436	438	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	458	first strand
Strand 2	E	472	476	anti-parallel
Strand 3	E	510	511	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	463	first strand
Strand 2	E	467	469	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	40	first strand
Strand 2	F	30	33	anti-parallel
Strand 3	F	242	245	parallel
Strand 4	F	217	220	parallel
Strand 5	F	265	268	parallel
Strand 6	F	291	294	parallel
Strand 7	F	313	319	parallel
Strand 8	F	326	329	anti-parallel
Strand 9	F	353	354	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	113	117	parallel
Strand 3	F	65	69	parallel
Strand 4	F	89	92	parallel
Strand 5	F	169	175	parallel
Strand 6	F	183	188	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	363	first strand
Strand 2	F	378	383	anti-parallel
Strand 3	F	407	415	anti-parallel
Strand 4	F	421	426	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	431	433	first strand
Strand 2	F	436	438	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	458	first strand
Strand 2	F	472	476	anti-parallel
Strand 3	F	510	511	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	461	463	first strand
Strand 2	F	467	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JYU