Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JZD entry

There are 4 chains in PDB entry 8JZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 166
B
 SER 2LYS 14
C
 MET 1ASN 166
D
 LYS 3LYS 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8JZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
15 21Right-handed alpha
Helix 3
AA3
A
21 31Right-handed alpha
Helix 4
AA4
A
36 53Right-handed alpha
Helix 5
AA5
A
54 67Right-handed alpha
Helix 6
AA6
A
76 81Right-handed alpha
Helix 7
AA7
A
83 101Right-handed alpha
Helix 8
AA8
A
113 123Right-handed alpha
Helix 9
AA9
A
125 150Right-handed alpha
Helix 10
AB1
A
154 166Right-handed alpha
Helix 11
AB2
B
3 7Right-handed 310
Helix 12
AB3
C
2 12Right-handed alpha
Helix 13
AB4
C
15 21Right-handed alpha
Helix 14
AB5
C
21 31Right-handed alpha
Helix 15
AB6
C
36 52Right-handed alpha
Helix 16
AB7
C
54 67Right-handed alpha
Helix 17
AB8
C
76 81Right-handed alpha
Helix 18
AB9
C
83 101Right-handed alpha
Helix 19
AC1
C
113 123Right-handed alpha
Helix 20
AC2
C
125 150Right-handed alpha
Helix 21
AC3
C
154 166Right-handed alpha
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There are 2 sheets in PDB entry 8JZD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
B
11 13anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 105first strand
Strand 2
D
11 12anti-parallel
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