Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JZE entry

There are 27 chains in PDB entry 8JZE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	LYS 1	UNK 200
K	GLY 13	UNK 189
z	UNK 31	UNK 108
y	UNK 1	UNK 131
G	UNK 1	LEU 220
A	GLU 15	TYR 203
c	SER 84	SER 169
d	VAL 76	LEU 293
e	PRO 55	VAL 127
f	ALA 72	SER 255
h	TYR 1	LYS 131
i	LYS 59	SER 177
j	ALA 1	TRP 98
l	LYS 37	PHE 286
m	ARG 65	PHE 143
a	ILE 3	THR 672
b	GLY 35	SER 697
B	UNK 71	TYR 262
D	PHE 29	TYR 193
F	PHE 28	ALA 203
H	PHE 64	TRP 223
J	ARG 73	UNK 292
L	ALA 96	PHE 280
M	PHE 110	ILE 282
N	GLU 33	TRP 189
O	GLU 80	TYR 240
P	PHE 27	TRP 191

There are205 helices in PDB entry 8JZE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	30	35	Right-handed alpha
Helix 2	AA2	I	36	65	Right-handed alpha
Helix 3	AA3	I	75	81	Right-handed 310
Helix 4	AA4	I	84	103	Right-handed alpha
Helix 5	AA5	I	126	130	Right-handed 310
Helix 6	AA6	I	136	167	Right-handed alpha
Helix 7	AA7	I	188	195	Right-handed alpha
Helix 8	AA8	K	27	31	Right-handed 310
Helix 9	AA9	K	51	79	Right-handed alpha
Helix 10	AB1	K	84	88	Right-handed 310
Helix 11	AB2	K	90	102	Right-handed alpha
Helix 12	AB3	K	102	127	Right-handed alpha
Helix 13	AB4	K	146	178	Right-handed alpha
Helix 14	AB5	z	44	49	Right-handed alpha
Helix 15	AB6	y	2	10	Right-handed alpha
Helix 16	AB7	y	19	35	Right-handed alpha
Helix 17	AB8	y	42	47	Right-handed alpha
Helix 18	AB9	y	81	104	Right-handed alpha
Helix 19	AC1	G	6	10	Right-handed 310
Helix 20	AC2	G	41	47	Right-handed alpha
Helix 21	AC3	G	53	57	Right-handed 310
Helix 22	AC4	G	62	67	Right-handed 310
Helix 23	AC5	G	68	74	Right-handed alpha
Helix 24	AC6	G	84	110	Right-handed alpha
Helix 25	AC7	G	125	131	Right-handed alpha
Helix 26	AC8	G	138	154	Right-handed alpha
Helix 27	AC9	G	158	162	Right-handed 310
Helix 28	AD1	G	185	213	Right-handed alpha
Helix 29	AD2	A	15	19	Right-handed 310
Helix 30	AD3	A	38	43	Right-handed alpha
Helix 31	AD4	A	46	70	Right-handed alpha
Helix 32	AD5	A	71	73	Right-handed 310
Helix 33	AD6	A	87	91	Right-handed 310
Helix 34	AD7	A	118	131	Right-handed alpha
Helix 35	AD8	A	132	138	Right-handed alpha
Helix 36	AD9	A	163	196	Right-handed alpha
Helix 37	AE1	c	97	103	Right-handed alpha
Helix 38	AE2	c	126	130	Right-handed 310
Helix 39	AE3	c	134	140	Right-handed alpha
Helix 40	AE4	c	152	156	Right-handed 310
Helix 41	AE5	c	157	162	Right-handed alpha
Helix 42	AE6	d	145	159	Right-handed alpha
Helix 43	AE7	d	202	206	Right-handed 310
Helix 44	AE8	d	208	213	Right-handed 310
Helix 45	AE9	d	220	224	Right-handed 310
Helix 46	AF1	d	225	239	Right-handed alpha
Helix 47	AF2	d	240	245	Right-handed 310
Helix 48	AF3	d	266	290	Right-handed alpha
Helix 49	AF4	f	73	78	Right-handed alpha
Helix 50	AF5	f	88	92	Right-handed 310
Helix 51	AF6	f	93	97	Right-handed 310
Helix 52	AF7	f	106	126	Right-handed alpha
Helix 53	AF8	f	131	151	Right-handed alpha
Helix 54	AF9	f	177	202	Right-handed alpha
Helix 55	AG1	f	205	210	Right-handed alpha
Helix 56	AG2	f	212	223	Right-handed alpha
Helix 57	AG3	f	225	236	Right-handed alpha
Helix 58	AG4	f	242	246	Right-handed 310
Helix 59	AG5	h	4	24	Right-handed alpha
Helix 60	AG6	h	30	34	Right-handed 310
Helix 61	AG7	h	54	63	Right-handed 310
Helix 62	AG8	h	64	88	Right-handed alpha
Helix 63	AG9	h	92	98	Right-handed alpha
Helix 64	AH1	h	103	111	Right-handed alpha
Helix 65	AH2	h	111	129	Right-handed alpha
Helix 66	AH3	i	63	76	Right-handed alpha
Helix 67	AH4	i	76	90	Right-handed alpha
Helix 68	AH5	i	103	116	Right-handed alpha
Helix 69	AH6	i	131	147	Right-handed alpha
Helix 70	AH7	i	154	164	Right-handed alpha
Helix 71	AH8	j	10	14	Right-handed 310
Helix 72	AH9	j	59	68	Right-handed alpha
Helix 73	AI1	j	69	92	Right-handed alpha
Helix 74	AI2	j	93	96	Right-handed 310
Helix 75	AI3	l	50	61	Right-handed alpha
Helix 76	AI4	l	62	66	Right-handed 310
Helix 77	AI5	l	73	83	Right-handed alpha
Helix 78	AI6	l	94	103	Right-handed alpha
Helix 79	AI7	l	113	129	Right-handed alpha
Helix 80	AI8	l	164	169	Right-handed alpha
Helix 81	AI9	l	169	178	Right-handed alpha
Helix 82	AJ1	l	187	204	Right-handed alpha
Helix 83	AJ2	l	204	209	Right-handed alpha
Helix 84	AJ3	l	220	245	Right-handed alpha
Helix 85	AJ4	l	258	286	Right-handed alpha
Helix 86	AJ5	m	69	76	Right-handed alpha
Helix 87	AJ6	m	88	116	Right-handed alpha
Helix 88	AJ7	m	120	125	Right-handed alpha
Helix 89	AJ8	m	132	142	Right-handed alpha
Helix 90	AJ9	a	3	7	Right-handed 310
Helix 91	AK1	a	8	12	Right-handed 310
Helix 92	AK2	a	29	38	Right-handed alpha
Helix 93	AK3	a	48	81	Right-handed alpha
Helix 94	AK4	a	83	90	Right-handed alpha
Helix 95	AK5	a	106	110	Right-handed 310
Helix 96	AK6	a	126	134	Right-handed alpha
Helix 97	AK7	a	138	167	Right-handed alpha
Helix 98	AK8	a	172	175	Right-handed 310
Helix 99	AK9	a	176	190	Right-handed alpha
Helix 100	AL1	a	192	204	Right-handed alpha
Helix 101	AL2	a	207	213	Right-handed alpha
Helix 102	AL3	a	220	225	Right-handed alpha
Helix 103	AL4	a	254	276	Right-handed alpha
Helix 104	AL5	a	284	291	Right-handed alpha
Helix 105	AL6	a	293	316	Right-handed alpha
Helix 106	AL7	a	328	361	Right-handed alpha
Helix 107	AL8	a	364	368	Right-handed 310
Helix 108	AL9	a	369	401	Right-handed alpha
Helix 109	AM1	a	403	407	Right-handed 310
Helix 110	AM2	a	417	422	Right-handed alpha
Helix 111	AM3	a	448	475	Right-handed alpha
Helix 112	AM4	a	506	537	Right-handed alpha
Helix 113	AM5	a	554	559	Right-handed alpha
Helix 114	AM6	a	561	569	Right-handed alpha
Helix 115	AM7	a	574	579	Right-handed alpha
Helix 116	AM8	a	586	609	Right-handed alpha
Helix 117	AM9	a	610	628	Right-handed alpha
Helix 118	AN1	a	640	672	Right-handed alpha
Helix 119	AN2	b	39	47	Right-handed alpha
Helix 120	AN3	b	51	55	Right-handed 310
Helix 121	AN4	b	60	92	Right-handed alpha
Helix 122	AN5	b	95	100	Right-handed alpha
Helix 123	AN6	b	140	149	Right-handed alpha
Helix 124	AN7	b	152	188	Right-handed alpha
Helix 125	AN8	b	189	191	Right-handed 310
Helix 126	AN9	b	195	205	Right-handed 310
Helix 127	AO1	b	206	211	Right-handed alpha
Helix 128	AO2	b	212	238	Right-handed alpha
Helix 129	AO3	b	240	244	Right-handed 310
Helix 130	AO4	b	251	255	Right-handed 310
Helix 131	AO5	b	269	288	Right-handed alpha
Helix 132	AO6	b	301	308	Right-handed alpha
Helix 133	AO7	b	317	343	Right-handed alpha
Helix 134	AO8	b	354	385	Right-handed alpha
Helix 135	AO9	b	396	404	Right-handed alpha
Helix 136	AP1	b	404	436	Right-handed alpha
Helix 137	AP2	b	438	442	Right-handed 310
Helix 138	AP3	b	447	467	Right-handed alpha
Helix 139	AP4	b	483	510	Right-handed alpha
Helix 140	AP5	b	519	523	Right-handed 310
Helix 141	AP6	b	541	570	Right-handed alpha
Helix 142	AP7	b	570	577	Right-handed alpha
Helix 143	AP8	b	580	587	Right-handed alpha
Helix 144	AP9	b	588	593	Right-handed alpha
Helix 145	AQ1	b	593	598	Right-handed alpha
Helix 146	AQ2	b	608	630	Right-handed alpha
Helix 147	AQ3	b	632	648	Right-handed alpha
Helix 148	AQ4	b	650	655	Right-handed alpha
Helix 149	AQ5	b	668	687	Right-handed alpha
Helix 150	AQ6	b	687	697	Right-handed alpha
Helix 151	AQ7	B	87	91	Right-handed 310
Helix 152	AQ8	B	103	107	Right-handed 310
Helix 153	AQ9	B	126	154	Right-handed alpha
Helix 154	AR1	B	169	178	Right-handed alpha
Helix 155	AR2	B	179	203	Right-handed alpha
Helix 156	AR3	B	225	255	Right-handed alpha
Helix 157	AR4	D	52	83	Right-handed alpha
Helix 158	AR5	D	104	110	Right-handed 310
Helix 159	AR6	D	112	128	Right-handed alpha
Helix 160	AR7	D	157	189	Right-handed alpha
Helix 161	AR8	F	51	78	Right-handed alpha
Helix 162	AR9	F	79	81	Right-handed 310
Helix 163	AS1	F	89	93	Right-handed 310
Helix 164	AS2	F	95	99	Right-handed 310
Helix 165	AS3	F	104	108	Right-handed 310
Helix 166	AS4	F	110	127	Right-handed alpha
Helix 167	AS5	F	166	195	Right-handed alpha
Helix 168	AS6	H	87	118	Right-handed alpha
Helix 169	AS7	H	147	164	Right-handed alpha
Helix 170	AS8	H	171	176	Right-handed 310
Helix 171	AS9	H	190	219	Right-handed alpha
Helix 172	AT1	J	74	80	Right-handed 310
Helix 173	AT2	J	101	131	Right-handed alpha
Helix 174	AT3	J	134	139	Right-handed alpha
Helix 175	AT4	J	148	156	Right-handed alpha
Helix 176	AT5	J	157	177	Right-handed alpha
Helix 177	AT6	J	191	195	Right-handed 310
Helix 178	AT7	J	207	235	Right-handed alpha
Helix 179	AT8	J	253	258	Right-handed alpha
Helix 180	AT9	L	99	104	Right-handed alpha
Helix 181	AU1	L	105	107	Right-handed 310
Helix 182	AU2	L	141	143	Right-handed 310
Helix 183	AU3	L	144	168	Right-handed alpha
Helix 184	AU4	L	169	171	Right-handed 310
Helix 185	AU5	L	195	198	Right-handed 310
Helix 186	AU6	L	199	215	Right-handed alpha
Helix 187	AU7	L	216	221	Right-handed alpha
Helix 188	AU8	L	240	271	Right-handed alpha
Helix 189	AU9	M	137	139	Right-handed 310
Helix 190	AV1	M	140	164	Right-handed alpha
Helix 191	AV2	M	184	190	Right-handed alpha
Helix 192	AV3	M	199	220	Right-handed alpha
Helix 193	AV4	M	243	274	Right-handed alpha
Helix 194	AV5	N	54	80	Right-handed alpha
Helix 195	AV6	N	113	131	Right-handed alpha
Helix 196	AV7	N	157	185	Right-handed alpha
Helix 197	AV8	O	102	129	Right-handed alpha
Helix 198	AV9	O	154	158	Right-handed 310
Helix 199	AW1	O	162	180	Right-handed alpha
Helix 200	AW2	O	206	236	Right-handed alpha
Helix 201	AW3	P	50	81	Right-handed alpha
Helix 202	AW4	P	90	93	Right-handed 310
Helix 203	AW5	P	104	108	Right-handed 310
Helix 204	AW6	P	110	126	Right-handed alpha
Helix 205	AW7	P	155	188	Right-handed alpha

There are 17 sheets in PDB entry 8JZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	147	150	first strand
Strand 2	c	86	90	anti-parallel
Strand 3	d	198	199	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	109	112	first strand
Strand 2	c	120	123	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	95	96	first strand
Strand 2	d	131	133	anti-parallel
Strand 3	d	123	125	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	138	143	first strand
Strand 2	d	111	117	anti-parallel
Strand 3	d	165	169	anti-parallel
Strand 4	d	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	64	66	first strand
Strand 2	e	78	84	anti-parallel
Strand 3	e	94	97	anti-parallel
Strand 4	e	108	111	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	100	102	first strand
Strand 2	f	155	157	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	47	48	first strand
Strand 2	h	51	52	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	29	32	first strand
Strand 2	j	40	43	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	92	93	first strand
Strand 2	L	109	110	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	131	138	first strand
Strand 2	l	141	150	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	112	115	first strand
Strand 2	a	118	120	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	434	435	first strand
Strand 2	a	440	442	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	109	113	first strand
Strand 2	b	133	136	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	600	601	first strand
Strand 2	b	604	605	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	84	85	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	139	141	first strand
Strand 2	O	145	147	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	87	89	first strand
Strand 2	P	94	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JZE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZE