Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JZI entry

There are 4 chains in PDB entry 8JZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	ALA 407
B	GLN 3	ALA 407
C	GLN 3	ALA 407
D	GLN 3	ALA 407

There are 52 helices in PDB entry 8JZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	39	Right-handed alpha
Helix 2	AA2	A	68	81	Right-handed alpha
Helix 3	AA3	A	85	88	Right-handed 310
Helix 4	AA4	A	150	169	Right-handed alpha
Helix 5	AA5	A	210	222	Right-handed alpha
Helix 6	AA6	A	222	230	Right-handed alpha
Helix 7	AA7	A	232	237	Right-handed 310
Helix 8	AA8	A	289	308	Right-handed alpha
Helix 9	AA9	A	343	355	Right-handed alpha
Helix 10	AB1	A	358	367	Right-handed alpha
Helix 11	AB2	A	373	378	Right-handed 310
Helix 12	AB3	A	389	393	Right-handed 310
Helix 13	AB4	A	396	404	Right-handed alpha
Helix 14	AB5	B	19	39	Right-handed alpha
Helix 15	AB6	B	68	81	Right-handed alpha
Helix 16	AB7	B	85	88	Right-handed 310
Helix 17	AB8	B	150	169	Right-handed alpha
Helix 18	AB9	B	210	222	Right-handed alpha
Helix 19	AC1	B	222	230	Right-handed alpha
Helix 20	AC2	B	232	236	Right-handed 310
Helix 21	AC3	B	289	308	Right-handed alpha
Helix 22	AC4	B	343	355	Right-handed alpha
Helix 23	AC5	B	358	366	Right-handed alpha
Helix 24	AC6	B	373	377	Right-handed 310
Helix 25	AC7	B	389	393	Right-handed 310
Helix 26	AC8	B	396	404	Right-handed alpha
Helix 27	AC9	C	19	39	Right-handed alpha
Helix 28	AD1	C	68	81	Right-handed alpha
Helix 29	AD2	C	85	88	Right-handed 310
Helix 30	AD3	C	150	169	Right-handed alpha
Helix 31	AD4	C	210	222	Right-handed alpha
Helix 32	AD5	C	222	231	Right-handed alpha
Helix 33	AD6	C	232	236	Right-handed 310
Helix 34	AD7	C	289	308	Right-handed alpha
Helix 35	AD8	C	343	355	Right-handed alpha
Helix 36	AD9	C	358	367	Right-handed alpha
Helix 37	AE1	C	373	377	Right-handed 310
Helix 38	AE2	C	389	393	Right-handed 310
Helix 39	AE3	C	396	404	Right-handed alpha
Helix 40	AE4	D	19	39	Right-handed alpha
Helix 41	AE5	D	68	81	Right-handed alpha
Helix 42	AE6	D	85	88	Right-handed 310
Helix 43	AE7	D	150	169	Right-handed alpha
Helix 44	AE8	D	210	222	Right-handed alpha
Helix 45	AE9	D	222	230	Right-handed alpha
Helix 46	AF1	D	232	236	Right-handed 310
Helix 47	AF2	D	289	308	Right-handed alpha
Helix 48	AF3	D	343	355	Right-handed alpha
Helix 49	AF4	D	358	366	Right-handed alpha
Helix 50	AF5	D	373	378	Right-handed 310
Helix 51	AF6	D	389	393	Right-handed 310
Helix 52	AF7	D	396	404	Right-handed alpha

There are 16 sheets in PDB entry 8JZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	175	187	anti-parallel
Strand 3	A	193	205	anti-parallel
Strand 4	A	241	244	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	101	first strand
Strand 2	A	54	62	parallel
Strand 3	A	43	51	anti-parallel
Strand 4	A	259	261	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	89	90	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	142	first strand
Strand 2	A	313	320	anti-parallel
Strand 3	A	329	333	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	175	187	anti-parallel
Strand 3	B	193	205	anti-parallel
Strand 4	B	241	244	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	54	62	parallel
Strand 3	B	43	51	anti-parallel
Strand 4	B	260	261	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	89	90	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	142	first strand
Strand 2	B	313	320	anti-parallel
Strand 3	B	329	333	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	15	first strand
Strand 2	C	175	187	anti-parallel
Strand 3	C	193	205	anti-parallel
Strand 4	C	241	244	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	101	first strand
Strand 2	C	54	62	parallel
Strand 3	C	43	51	anti-parallel
Strand 4	C	260	261	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	89	90	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	142	first strand
Strand 2	C	313	320	anti-parallel
Strand 3	C	329	333	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	175	187	anti-parallel
Strand 3	D	193	205	anti-parallel
Strand 4	D	241	244	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	101	first strand
Strand 2	D	54	62	parallel
Strand 3	D	43	51	anti-parallel
Strand 4	D	260	261	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	89	90	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	142	first strand
Strand 2	D	313	320	anti-parallel
Strand 3	D	329	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZI