Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JZL entry

There are 6 chains in PDB entry 8JZL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 64	SER 561
B	GLN 64	SER 561
C	GLN 64	SER 561
D	GLN 64	SER 561
E	GLN 64	SER 561
F	GLN 64	SER 561

There are120 helices in PDB entry 8JZL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	92	Right-handed alpha
Helix 2	AA2	A	95	111	Right-handed alpha
Helix 3	AA3	A	117	143	Right-handed alpha
Helix 4	AA4	A	146	169	Right-handed alpha
Helix 5	AA5	A	258	280	Right-handed alpha
Helix 6	AA6	A	281	290	Right-handed alpha
Helix 7	AA7	A	312	328	Right-handed alpha
Helix 8	AA8	A	362	367	Right-handed alpha
Helix 9	AA9	A	371	388	Right-handed alpha
Helix 10	AB1	A	398	406	Right-handed alpha
Helix 11	AB2	A	411	429	Right-handed alpha
Helix 12	AB3	A	430	433	Right-handed 310
Helix 13	AB4	A	439	452	Right-handed alpha
Helix 14	AB5	A	465	483	Right-handed alpha
Helix 15	AB6	A	495	509	Right-handed alpha
Helix 16	AB7	A	510	520	Right-handed alpha
Helix 17	AB8	A	532	536	Right-handed 310
Helix 18	AB9	A	538	543	Right-handed alpha
Helix 19	AC1	A	545	553	Right-handed alpha
Helix 20	AC2	A	555	559	Right-handed 310
Helix 21	AC3	B	72	92	Right-handed alpha
Helix 22	AC4	B	95	111	Right-handed alpha
Helix 23	AC5	B	117	143	Right-handed alpha
Helix 24	AC6	B	146	169	Right-handed alpha
Helix 25	AC7	B	258	280	Right-handed alpha
Helix 26	AC8	B	281	290	Right-handed alpha
Helix 27	AC9	B	312	328	Right-handed alpha
Helix 28	AD1	B	362	367	Right-handed alpha
Helix 29	AD2	B	371	388	Right-handed alpha
Helix 30	AD3	B	398	406	Right-handed alpha
Helix 31	AD4	B	411	429	Right-handed alpha
Helix 32	AD5	B	430	433	Right-handed 310
Helix 33	AD6	B	439	452	Right-handed alpha
Helix 34	AD7	B	465	483	Right-handed alpha
Helix 35	AD8	B	495	509	Right-handed alpha
Helix 36	AD9	B	510	520	Right-handed alpha
Helix 37	AE1	B	532	536	Right-handed 310
Helix 38	AE2	B	538	543	Right-handed alpha
Helix 39	AE3	B	545	553	Right-handed alpha
Helix 40	AE4	B	555	559	Right-handed 310
Helix 41	AE5	C	72	92	Right-handed alpha
Helix 42	AE6	C	95	111	Right-handed alpha
Helix 43	AE7	C	117	143	Right-handed alpha
Helix 44	AE8	C	146	169	Right-handed alpha
Helix 45	AE9	C	258	280	Right-handed alpha
Helix 46	AF1	C	281	290	Right-handed alpha
Helix 47	AF2	C	312	328	Right-handed alpha
Helix 48	AF3	C	362	367	Right-handed alpha
Helix 49	AF4	C	371	388	Right-handed alpha
Helix 50	AF5	C	398	406	Right-handed alpha
Helix 51	AF6	C	411	429	Right-handed alpha
Helix 52	AF7	C	430	433	Right-handed 310
Helix 53	AF8	C	439	452	Right-handed alpha
Helix 54	AF9	C	465	483	Right-handed alpha
Helix 55	AG1	C	495	509	Right-handed alpha
Helix 56	AG2	C	510	520	Right-handed alpha
Helix 57	AG3	C	532	536	Right-handed 310
Helix 58	AG4	C	538	543	Right-handed alpha
Helix 59	AG5	C	545	553	Right-handed alpha
Helix 60	AG6	C	555	559	Right-handed 310
Helix 61	AG7	D	72	92	Right-handed alpha
Helix 62	AG8	D	95	111	Right-handed alpha
Helix 63	AG9	D	117	143	Right-handed alpha
Helix 64	AH1	D	146	169	Right-handed alpha
Helix 65	AH2	D	258	280	Right-handed alpha
Helix 66	AH3	D	281	290	Right-handed alpha
Helix 67	AH4	D	312	328	Right-handed alpha
Helix 68	AH5	D	362	367	Right-handed alpha
Helix 69	AH6	D	371	388	Right-handed alpha
Helix 70	AH7	D	398	406	Right-handed alpha
Helix 71	AH8	D	411	429	Right-handed alpha
Helix 72	AH9	D	430	433	Right-handed 310
Helix 73	AI1	D	439	452	Right-handed alpha
Helix 74	AI2	D	465	483	Right-handed alpha
Helix 75	AI3	D	495	509	Right-handed alpha
Helix 76	AI4	D	510	520	Right-handed alpha
Helix 77	AI5	D	532	536	Right-handed 310
Helix 78	AI6	D	538	543	Right-handed alpha
Helix 79	AI7	D	545	553	Right-handed alpha
Helix 80	AI8	D	555	559	Right-handed 310
Helix 81	AI9	E	72	92	Right-handed alpha
Helix 82	AJ1	E	95	111	Right-handed alpha
Helix 83	AJ2	E	117	143	Right-handed alpha
Helix 84	AJ3	E	146	169	Right-handed alpha
Helix 85	AJ4	E	258	280	Right-handed alpha
Helix 86	AJ5	E	281	290	Right-handed alpha
Helix 87	AJ6	E	312	328	Right-handed alpha
Helix 88	AJ7	E	362	367	Right-handed alpha
Helix 89	AJ8	E	371	388	Right-handed alpha
Helix 90	AJ9	E	398	406	Right-handed alpha
Helix 91	AK1	E	411	429	Right-handed alpha
Helix 92	AK2	E	430	433	Right-handed 310
Helix 93	AK3	E	439	452	Right-handed alpha
Helix 94	AK4	E	465	483	Right-handed alpha
Helix 95	AK5	E	495	509	Right-handed alpha
Helix 96	AK6	E	510	520	Right-handed alpha
Helix 97	AK7	E	532	536	Right-handed 310
Helix 98	AK8	E	538	543	Right-handed alpha
Helix 99	AK9	E	545	553	Right-handed alpha
Helix 100	AL1	E	555	559	Right-handed 310
Helix 101	AL2	F	72	92	Right-handed alpha
Helix 102	AL3	F	95	111	Right-handed alpha
Helix 103	AL4	F	117	143	Right-handed alpha
Helix 104	AL5	F	146	169	Right-handed alpha
Helix 105	AL6	F	258	280	Right-handed alpha
Helix 106	AL7	F	281	290	Right-handed alpha
Helix 107	AL8	F	312	328	Right-handed alpha
Helix 108	AL9	F	362	367	Right-handed alpha
Helix 109	AM1	F	371	388	Right-handed alpha
Helix 110	AM2	F	398	406	Right-handed alpha
Helix 111	AM3	F	411	429	Right-handed alpha
Helix 112	AM4	F	430	433	Right-handed 310
Helix 113	AM5	F	439	452	Right-handed alpha
Helix 114	AM6	F	465	483	Right-handed alpha
Helix 115	AM7	F	495	509	Right-handed alpha
Helix 116	AM8	F	510	520	Right-handed alpha
Helix 117	AM9	F	532	536	Right-handed 310
Helix 118	AN1	F	538	543	Right-handed alpha
Helix 119	AN2	F	545	553	Right-handed alpha
Helix 120	AN3	F	555	559	Right-handed 310

There are 12 sheets in PDB entry 8JZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	180	first strand
Strand 2	A	183	191	anti-parallel
Strand 3	A	227	235	anti-parallel
Strand 4	A	238	248	anti-parallel
Strand 5	A	455	459	parallel
Strand 6	A	294	302	parallel
Strand 7	A	345	358	parallel
Strand 8	A	334	339	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	200	201	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	180	first strand
Strand 2	B	183	191	anti-parallel
Strand 3	B	227	235	anti-parallel
Strand 4	B	238	248	anti-parallel
Strand 5	B	455	459	parallel
Strand 6	B	294	302	parallel
Strand 7	B	345	358	parallel
Strand 8	B	334	339	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	200	201	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	180	first strand
Strand 2	C	183	191	anti-parallel
Strand 3	C	227	235	anti-parallel
Strand 4	C	238	248	anti-parallel
Strand 5	C	455	459	parallel
Strand 6	C	294	302	parallel
Strand 7	C	345	358	parallel
Strand 8	C	334	339	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	200	201	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	180	first strand
Strand 2	D	183	191	anti-parallel
Strand 3	D	227	235	anti-parallel
Strand 4	D	238	248	anti-parallel
Strand 5	D	455	459	parallel
Strand 6	D	294	302	parallel
Strand 7	D	345	358	parallel
Strand 8	D	334	339	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	200	201	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	180	first strand
Strand 2	E	183	191	anti-parallel
Strand 3	E	227	235	anti-parallel
Strand 4	E	238	248	anti-parallel
Strand 5	E	455	459	parallel
Strand 6	E	294	302	parallel
Strand 7	E	345	358	parallel
Strand 8	E	334	339	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	197	first strand
Strand 2	E	200	201	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	180	first strand
Strand 2	F	183	191	anti-parallel
Strand 3	F	227	235	anti-parallel
Strand 4	F	238	248	anti-parallel
Strand 5	F	455	459	parallel
Strand 6	F	294	302	parallel
Strand 7	F	345	358	parallel
Strand 8	F	334	339	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	197	first strand
Strand 2	F	200	201	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JZL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZL