Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JZP entry

There are 6 chains in PDB entry 8JZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	LEU 315
B	SER 6	TYR 354
C	GLU 3	ASN 340
F	LEU 1	ARG 74
G	ALA 7	ARG 62
H	ASP 1	LEU 247

There are 37 helices in PDB entry 8JZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	53	Right-handed alpha
Helix 2	AA2	A	54	64	Right-handed alpha
Helix 3	AA3	A	70	87	Right-handed alpha
Helix 4	AA4	A	88	98	Right-handed alpha
Helix 5	AA5	A	105	140	Right-handed alpha
Helix 6	AA6	A	140	148	Right-handed alpha
Helix 7	AA7	A	149	174	Right-handed alpha
Helix 8	AA8	A	198	232	Right-handed alpha
Helix 9	AA9	A	238	268	Right-handed alpha
Helix 10	AB1	A	271	304	Right-handed alpha
Helix 11	AB2	A	308	314	Right-handed alpha
Helix 12	AB3	B	8	32	Right-handed alpha
Helix 13	AB4	B	45	54	Right-handed alpha
Helix 14	AB5	B	202	205	Right-handed 310
Helix 15	AB6	B	208	217	Right-handed 310
Helix 16	AB7	B	245	256	Right-handed alpha
Helix 17	AB8	B	271	282	Right-handed alpha
Helix 18	AB9	B	283	287	Right-handed 310
Helix 19	AC1	B	296	310	Right-handed alpha
Helix 20	AC2	B	329	351	Right-handed alpha
Helix 21	AC3	C	4	25	Right-handed alpha
Helix 22	AC4	C	29	34	Right-handed alpha
Helix 23	AC5	C	35	37	Right-handed 310
Helix 24	AC6	F	2	11	Right-handed alpha
Helix 25	AC7	F	15	26	Right-handed alpha
Helix 26	AC8	F	33	39	Right-handed alpha
Helix 27	AC9	F	40	41	Right-handed 310
Helix 28	AD1	F	44	45	Right-handed 310
Helix 29	AD2	F	46	63	Right-handed alpha
Helix 30	AD3	G	8	24	Right-handed alpha
Helix 31	AD4	G	29	45	Right-handed alpha
Helix 32	AD5	G	46	48	Right-handed 310
Helix 33	AD6	H	28	32	Right-handed 310
Helix 34	AD7	H	53	56	Right-handed 310
Helix 35	AD8	H	74	76	Right-handed 310
Helix 36	AD9	H	87	91	Right-handed 310
Helix 37	AE1	H	220	224	Right-handed 310

There are 16 sheets in PDB entry 8JZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	187	190	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	192	first strand
Strand 2	B	195	201	anti-parallel
Strand 3	B	33	37	parallel
Strand 4	B	221	222	parallel
Strand 5	B	264	265	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	227	first strand
Strand 2	B	268	270	parallel
Strand 3	B	322	323	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	330	anti-parallel
Strand 4	C	317	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	153	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	167	170	anti-parallel
Strand 4	C	178	179	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	260	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	304	309	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	94	anti-parallel
Strand 4	H	38	39	anti-parallel
Strand 5	H	45	46	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	49	51	anti-parallel
Strand 3	H	58	60	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	99	first strand
Strand 2	H	107	111	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	142	first strand
Strand 2	H	156	161	anti-parallel
Strand 3	H	211	215	anti-parallel
Strand 4	H	204	208	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	225	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	186	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZP