Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JZQ entry

There are 4 chains in PDB entry 8JZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 8GLN 442
B
 ILE 8GLN 442
C
 ILE 8GLN 442
D
 ILE 8GLN 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8JZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
44 51Right-handed alpha
Helix 3
AA3
A
92 96Right-handed 310
Helix 4
AA4
A
97 109Right-handed alpha
Helix 5
AA5
A
120 128Right-handed alpha
Helix 6
AA6
A
140 153Right-handed alpha
Helix 7
AA7
A
181 191Right-handed alpha
Helix 8
AA8
A
201 217Right-handed alpha
Helix 9
AA9
A
239 248Right-handed alpha
Helix 10
AB1
A
268 279Right-handed alpha
Helix 11
AB2
A
319 326Right-handed alpha
Helix 12
AB3
A
337 347Right-handed alpha
Helix 13
AB4
A
359 371Right-handed alpha
Helix 14
AB5
A
385 398Right-handed alpha
Helix 15
AB6
A
399 401Right-handed 310
Helix 16
AB7
A
402 419Right-handed alpha
Helix 17
AB8
A
421 438Right-handed alpha
Helix 18
AB9
B
17 33Right-handed alpha
Helix 19
AC1
B
44 51Right-handed alpha
Helix 20
AC2
B
92 96Right-handed 310
Helix 21
AC3
B
97 109Right-handed alpha
Helix 22
AC4
B
120 128Right-handed alpha
Helix 23
AC5
B
140 153Right-handed alpha
Helix 24
AC6
B
181 191Right-handed alpha
Helix 25
AC7
B
201 217Right-handed alpha
Helix 26
AC8
B
239 248Right-handed alpha
Helix 27
AC9
B
268 279Right-handed alpha
Helix 28
AD1
B
319 326Right-handed alpha
Helix 29
AD2
B
337 347Right-handed alpha
Helix 30
AD3
B
359 371Right-handed alpha
Helix 31
AD4
B
385 398Right-handed alpha
Helix 32
AD5
B
399 401Right-handed 310
Helix 33
AD6
B
402 419Right-handed alpha
Helix 34
AD7
B
421 438Right-handed alpha
Helix 35
AD8
C
17 33Right-handed alpha
Helix 36
AD9
C
44 51Right-handed alpha
Helix 37
AE1
C
92 96Right-handed 310
Helix 38
AE2
C
97 109Right-handed alpha
Helix 39
AE3
C
120 128Right-handed alpha
Helix 40
AE4
C
140 153Right-handed alpha
Helix 41
AE5
C
181 191Right-handed alpha
Helix 42
AE6
C
201 217Right-handed alpha
Helix 43
AE7
C
239 248Right-handed alpha
Helix 44
AE8
C
268 279Right-handed alpha
Helix 45
AE9
C
319 326Right-handed alpha
Helix 46
AF1
C
337 347Right-handed alpha
Helix 47
AF2
C
359 371Right-handed alpha
Helix 48
AF3
C
385 398Right-handed alpha
Helix 49
AF4
C
399 401Right-handed 310
Helix 50
AF5
C
402 419Right-handed alpha
Helix 51
AF6
C
421 438Right-handed alpha
Helix 52
AF7
D
17 33Right-handed alpha
Helix 53
AF8
D
44 51Right-handed alpha
Helix 54
AF9
D
92 96Right-handed 310
Helix 55
AG1
D
97 109Right-handed alpha
Helix 56
AG2
D
120 128Right-handed alpha
Helix 57
AG3
D
140 153Right-handed alpha
Helix 58
AG4
D
181 191Right-handed alpha
Helix 59
AG5
D
201 217Right-handed alpha
Helix 60
AG6
D
239 248Right-handed alpha
Helix 61
AG7
D
268 279Right-handed alpha
Helix 62
AG8
D
319 326Right-handed alpha
Helix 63
AG9
D
337 347Right-handed alpha
Helix 64
AH1
D
359 371Right-handed alpha
Helix 65
AH2
D
385 398Right-handed alpha
Helix 66
AH3
D
399 401Right-handed 310
Helix 67
AH4
D
402 419Right-handed alpha
Helix 68
AH5
D
421 438Right-handed alpha
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There are 8 sheets in PDB entry 8JZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
38 43parallel
Strand 3
A
9 13parallel
Strand 4
A
113 115parallel
Strand 5
A
133 137parallel
Strand 6
A
195 198parallel
Strand 7
A
219 222parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 314first strand
Strand 2
A
283 287parallel
Strand 3
A
254 258parallel
Strand 4
A
329 334parallel
Strand 5
A
351 353parallel
Strand 6
A
373 375parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
38 42parallel
Strand 3
B
9 13parallel
Strand 4
B
113 115parallel
Strand 5
B
133 137parallel
Strand 6
B
195 198parallel
Strand 7
B
219 222parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 314first strand
Strand 2
B
283 287parallel
Strand 3
B
254 258parallel
Strand 4
B
329 334parallel
Strand 5
B
351 353parallel
Strand 6
B
373 375parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
C
38 42parallel
Strand 3
C
9 13parallel
Strand 4
C
113 115parallel
Strand 5
C
133 137parallel
Strand 6
C
195 198parallel
Strand 7
C
219 222parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 314first strand
Strand 2
C
283 287parallel
Strand 3
C
254 258parallel
Strand 4
C
329 334parallel
Strand 5
C
351 353parallel
Strand 6
C
373 375parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 61first strand
Strand 2
D
39 42parallel
Strand 3
D
10 13parallel
Strand 4
D
113 115parallel
Strand 5
D
133 137parallel
Strand 6
D
195 198parallel
Strand 7
D
219 222parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
311 314first strand
Strand 2
D
283 287parallel
Strand 3
D
254 258parallel
Strand 4
D
329 334parallel
Strand 5
D
351 353parallel
Strand 6
D
373 375parallel
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