Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JZT entry

There are 6 chains in PDB entry 8JZT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 204LEU 260
B
 TRP 10ARG 140
C
 LEU 197LEU 260
D
 TRP 10ARG 139
E
 VAL 193GLU 261
F
 LEU 8ARG 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8JZT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 213Right-handed alpha
Helix 2
AA2
A
214 226Right-handed alpha
Helix 3
AA3
A
230 239Right-handed alpha
Helix 4
AA4
A
241 259Right-handed alpha
Helix 5
AA5
B
25 27Right-handed 310
Helix 6
AA6
B
28 42Right-handed alpha
Helix 7
AA7
B
46 68Right-handed alpha
Helix 8
AA8
B
103 113Right-handed alpha
Helix 9
AA9
B
125 129Right-handed 310
Helix 10
AB1
C
202 212Right-handed alpha
Helix 11
AB2
C
214 226Right-handed alpha
Helix 12
AB3
C
230 239Right-handed alpha
Helix 13
AB4
C
241 260Right-handed alpha
Helix 14
AB5
D
25 27Right-handed 310
Helix 15
AB6
D
28 41Right-handed alpha
Helix 16
AB7
D
46 68Right-handed alpha
Helix 17
AB8
D
103 113Right-handed alpha
Helix 18
AB9
D
125 129Right-handed 310
Helix 19
AC1
E
195 200Right-handed 310
Helix 20
AC2
E
202 213Right-handed alpha
Helix 21
AC3
E
214 227Right-handed alpha
Helix 22
AC4
E
230 239Right-handed alpha
Helix 23
AC5
E
241 260Right-handed alpha
Helix 24
AC6
F
9 13Right-handed 310
Helix 25
AC7
F
25 27Right-handed 310
Helix 26
AC8
F
28 40Right-handed alpha
Helix 27
AC9
F
46 68Right-handed alpha
Helix 28
AD1
F
103 113Right-handed alpha
Helix 29
AD2
F
125 129Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8JZT.

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
73 80anti-parallel
Strand 3
B
84 92anti-parallel
Strand 4
B
131 139anti-parallel
Strand 5
B
115 121anti-parallel
Strand 6
D
115 121anti-parallel
Strand 7
D
131 138anti-parallel
Strand 8
D
85 92anti-parallel
Strand 9
D
73 80anti-parallel
Strand 10
D
18 23anti-parallel
Strand 11
F
18 23anti-parallel
Strand 12
F
73 80anti-parallel
Strand 13
F
84 92anti-parallel
Strand 14
F
131 139anti-parallel
Strand 15
F
115 119anti-parallel
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