Analysis of interatomic Contacts of Structural Units in PDB entry:
8JZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JZW entry

There are 6 chains in PDB entry 8JZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 113TRP 174
D
 PRO 114TRP 174
F
 HIS 857LYS 868
A
 ASP 112HIS 175
B
 LYS 113HIS 175
E
 GLU 856LYS 868
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8JZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
115 120Right-handed 310
Helix 2
AA2
C
153 160Right-handed alpha
Helix 3
AA3
C
160 170Right-handed alpha
Helix 4
AA4
D
115 120Right-handed 310
Helix 5
AA5
D
153 160Right-handed alpha
Helix 6
AA6
D
160 171Right-handed alpha
Helix 7
AA7
A
115 120Right-handed 310
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
160 170Right-handed alpha
Helix 10
AB1
B
115 120Right-handed 310
Helix 11
AB2
B
153 160Right-handed alpha
Helix 12
AB3
B
160 171Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8JZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 130first strand
Strand 2
C
137 142anti-parallel
Strand 3
C
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 173first strand
Strand 2
F
861 863parallel
Strand 3
D
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 130first strand
Strand 2
D
137 142anti-parallel
Strand 3
D
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 130first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
E
860 864parallel
Strand 3
B
172 174anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 130first strand
Strand 2
B
137 142anti-parallel
Strand 3
B
149 152anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il