Analysis of interatomic Contacts of Structural Units in PDB entry:
8K03


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K03 entry

There are 2 chains in PDB entry 8K03 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 581
B
 MET 1GLY 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8K03. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
20 36Right-handed alpha
Helix 3
AA3
A
42 54Right-handed alpha
Helix 4
AA4
A
61 74Right-handed alpha
Helix 5
AA5
A
77 94Right-handed alpha
Helix 6
AA6
A
115 125Right-handed alpha
Helix 7
AA7
A
131 136Right-handed 310
Helix 8
AA8
A
146 150Right-handed 310
Helix 9
AA9
A
160 177Right-handed alpha
Helix 10
AB1
A
194 206Right-handed alpha
Helix 11
AB2
A
230 238Right-handed alpha
Helix 12
AB3
A
248 260Right-handed alpha
Helix 13
AB4
A
296 299Right-handed 310
Helix 14
AB5
A
300 313Right-handed alpha
Helix 15
AB6
A
323 328Right-handed alpha
Helix 16
AB7
A
341 348Right-handed alpha
Helix 17
AB8
A
365 369Right-handed 310
Helix 18
AB9
A
370 381Right-handed alpha
Helix 19
AC1
A
400 406Right-handed alpha
Helix 20
AC2
A
419 428Right-handed alpha
Helix 21
AC3
A
429 431Right-handed 310
Helix 22
AC4
A
479 488Right-handed alpha
Helix 23
AC5
A
507 516Right-handed alpha
Helix 24
AC6
A
531 541Right-handed alpha
Helix 25
AC7
A
557 565Right-handed alpha
Helix 26
AC8
A
568 581Right-handed alpha
Helix 27
AC9
B
2 16Right-handed alpha
Helix 28
AD1
B
20 36Right-handed alpha
Helix 29
AD2
B
42 54Right-handed alpha
Helix 30
AD3
B
61 74Right-handed alpha
Helix 31
AD4
B
77 94Right-handed alpha
Helix 32
AD5
B
115 125Right-handed alpha
Helix 33
AD6
B
131 136Right-handed 310
Helix 34
AD7
B
146 150Right-handed 310
Helix 35
AD8
B
160 177Right-handed alpha
Helix 36
AD9
B
194 206Right-handed alpha
Helix 37
AE1
B
230 238Right-handed alpha
Helix 38
AE2
B
248 260Right-handed alpha
Helix 39
AE3
B
296 299Right-handed 310
Helix 40
AE4
B
300 313Right-handed alpha
Helix 41
AE5
B
323 328Right-handed alpha
Helix 42
AE6
B
341 348Right-handed alpha
Helix 43
AE7
B
365 369Right-handed 310
Helix 44
AE8
B
370 381Right-handed alpha
Helix 45
AE9
B
400 406Right-handed alpha
Helix 46
AF1
B
419 428Right-handed alpha
Helix 47
AF2
B
429 431Right-handed 310
Helix 48
AF3
B
479 488Right-handed alpha
Helix 49
AF4
B
507 516Right-handed alpha
Helix 50
AF5
B
531 541Right-handed alpha
Helix 51
AF6
B
557 565Right-handed alpha
Helix 52
AF7
B
568 581Right-handed alpha
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There are 6 sheets in PDB entry 8K03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
182 186parallel
Strand 3
A
211 217parallel
Strand 4
A
266 271parallel
Strand 5
A
240 245parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
357 363parallel
Strand 3
A
384 389parallel
Strand 4
A
436 439parallel
Strand 5
A
411 414parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 464first strand
Strand 2
A
496 498anti-parallel
Strand 3
A
473 478parallel
Strand 4
A
519 524parallel
Strand 5
A
544 546parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
182 186parallel
Strand 3
B
211 217parallel
Strand 4
B
266 271parallel
Strand 5
B
240 245parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
357 363parallel
Strand 3
B
384 389parallel
Strand 4
B
436 439parallel
Strand 5
B
411 414parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 464first strand
Strand 2
B
496 498anti-parallel
Strand 3
B
473 478parallel
Strand 4
B
519 524parallel
Strand 5
B
544 546parallel
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