Analysis of interatomic Contacts of Structural Units in PDB entry:
8K04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K04 entry

There are 10 chains in PDB entry 8K04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 314
B	MET 1	ASN 314
C	MET 1	ASN 314
D	MET 1	ASN 314
E	MET 1	ASN 314
F	MET 1	ASN 314
G	MET 1	ASN 314
H	MET 1	ASN 314
I	MET 1	ASN 314
J	MET 1	ASN 314

There are140 helices in PDB entry 8K04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	42	Right-handed alpha
Helix 2	AA2	A	76	79	Right-handed 310
Helix 3	AA3	A	87	102	Right-handed alpha
Helix 4	AA4	A	114	126	Right-handed alpha
Helix 5	AA5	A	147	163	Right-handed alpha
Helix 6	AA6	A	190	199	Right-handed alpha
Helix 7	AA7	A	200	204	Right-handed 310
Helix 8	AA8	A	205	226	Right-handed alpha
Helix 9	AA9	A	234	247	Right-handed alpha
Helix 10	AB1	A	249	256	Right-handed 310
Helix 11	AB2	A	257	266	Right-handed alpha
Helix 12	AB3	A	267	271	Right-handed 310
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	284	286	Right-handed 310
Helix 15	AB6	B	20	42	Right-handed alpha
Helix 16	AB7	B	76	79	Right-handed 310
Helix 17	AB8	B	87	102	Right-handed alpha
Helix 18	AB9	B	114	126	Right-handed alpha
Helix 19	AC1	B	147	163	Right-handed alpha
Helix 20	AC2	B	190	199	Right-handed alpha
Helix 21	AC3	B	200	204	Right-handed 310
Helix 22	AC4	B	205	226	Right-handed alpha
Helix 23	AC5	B	234	247	Right-handed alpha
Helix 24	AC6	B	249	256	Right-handed 310
Helix 25	AC7	B	257	266	Right-handed alpha
Helix 26	AC8	B	267	271	Right-handed 310
Helix 27	AC9	B	272	283	Right-handed alpha
Helix 28	AD1	B	284	286	Right-handed 310
Helix 29	AD2	C	20	42	Right-handed alpha
Helix 30	AD3	C	76	79	Right-handed 310
Helix 31	AD4	C	87	102	Right-handed alpha
Helix 32	AD5	C	114	126	Right-handed alpha
Helix 33	AD6	C	147	163	Right-handed alpha
Helix 34	AD7	C	190	199	Right-handed alpha
Helix 35	AD8	C	200	204	Right-handed 310
Helix 36	AD9	C	205	226	Right-handed alpha
Helix 37	AE1	C	234	247	Right-handed alpha
Helix 38	AE2	C	249	256	Right-handed 310
Helix 39	AE3	C	257	266	Right-handed alpha
Helix 40	AE4	C	267	271	Right-handed 310
Helix 41	AE5	C	272	283	Right-handed alpha
Helix 42	AE6	C	284	286	Right-handed 310
Helix 43	AE7	D	20	42	Right-handed alpha
Helix 44	AE8	D	76	79	Right-handed 310
Helix 45	AE9	D	87	102	Right-handed alpha
Helix 46	AF1	D	114	126	Right-handed alpha
Helix 47	AF2	D	147	163	Right-handed alpha
Helix 48	AF3	D	190	199	Right-handed alpha
Helix 49	AF4	D	200	204	Right-handed 310
Helix 50	AF5	D	205	226	Right-handed alpha
Helix 51	AF6	D	234	247	Right-handed alpha
Helix 52	AF7	D	249	256	Right-handed 310
Helix 53	AF8	D	257	266	Right-handed alpha
Helix 54	AF9	D	267	271	Right-handed 310
Helix 55	AG1	D	272	283	Right-handed alpha
Helix 56	AG2	D	284	286	Right-handed 310
Helix 57	AG3	E	20	42	Right-handed alpha
Helix 58	AG4	E	76	79	Right-handed 310
Helix 59	AG5	E	87	102	Right-handed alpha
Helix 60	AG6	E	114	126	Right-handed alpha
Helix 61	AG7	E	147	163	Right-handed alpha
Helix 62	AG8	E	190	199	Right-handed alpha
Helix 63	AG9	E	200	204	Right-handed 310
Helix 64	AH1	E	205	226	Right-handed alpha
Helix 65	AH2	E	234	247	Right-handed alpha
Helix 66	AH3	E	249	256	Right-handed 310
Helix 67	AH4	E	257	266	Right-handed alpha
Helix 68	AH5	E	267	271	Right-handed 310
Helix 69	AH6	E	272	283	Right-handed alpha
Helix 70	AH7	E	284	286	Right-handed 310
Helix 71	AH8	F	20	42	Right-handed alpha
Helix 72	AH9	F	76	79	Right-handed 310
Helix 73	AI1	F	87	102	Right-handed alpha
Helix 74	AI2	F	114	126	Right-handed alpha
Helix 75	AI3	F	147	163	Right-handed alpha
Helix 76	AI4	F	190	199	Right-handed alpha
Helix 77	AI5	F	200	204	Right-handed 310
Helix 78	AI6	F	205	226	Right-handed alpha
Helix 79	AI7	F	234	247	Right-handed alpha
Helix 80	AI8	F	249	256	Right-handed 310
Helix 81	AI9	F	257	266	Right-handed alpha
Helix 82	AJ1	F	267	271	Right-handed 310
Helix 83	AJ2	F	272	283	Right-handed alpha
Helix 84	AJ3	F	284	286	Right-handed 310
Helix 85	AJ4	G	20	42	Right-handed alpha
Helix 86	AJ5	G	76	79	Right-handed 310
Helix 87	AJ6	G	87	102	Right-handed alpha
Helix 88	AJ7	G	114	126	Right-handed alpha
Helix 89	AJ8	G	147	163	Right-handed alpha
Helix 90	AJ9	G	190	199	Right-handed alpha
Helix 91	AK1	G	200	204	Right-handed 310
Helix 92	AK2	G	205	226	Right-handed alpha
Helix 93	AK3	G	234	247	Right-handed alpha
Helix 94	AK4	G	249	256	Right-handed 310
Helix 95	AK5	G	257	266	Right-handed alpha
Helix 96	AK6	G	267	271	Right-handed 310
Helix 97	AK7	G	272	283	Right-handed alpha
Helix 98	AK8	G	284	286	Right-handed 310
Helix 99	AK9	H	20	42	Right-handed alpha
Helix 100	AL1	H	76	79	Right-handed 310
Helix 101	AL2	H	87	102	Right-handed alpha
Helix 102	AL3	H	114	126	Right-handed alpha
Helix 103	AL4	H	147	163	Right-handed alpha
Helix 104	AL5	H	190	199	Right-handed alpha
Helix 105	AL6	H	200	204	Right-handed 310
Helix 106	AL7	H	205	226	Right-handed alpha
Helix 107	AL8	H	234	247	Right-handed alpha
Helix 108	AL9	H	249	256	Right-handed 310
Helix 109	AM1	H	257	266	Right-handed alpha
Helix 110	AM2	H	267	271	Right-handed 310
Helix 111	AM3	H	272	283	Right-handed alpha
Helix 112	AM4	H	284	286	Right-handed 310
Helix 113	AM5	I	20	42	Right-handed alpha
Helix 114	AM6	I	76	79	Right-handed 310
Helix 115	AM7	I	87	102	Right-handed alpha
Helix 116	AM8	I	114	126	Right-handed alpha
Helix 117	AM9	I	147	163	Right-handed alpha
Helix 118	AN1	I	190	199	Right-handed alpha
Helix 119	AN2	I	200	204	Right-handed 310
Helix 120	AN3	I	205	226	Right-handed alpha
Helix 121	AN4	I	234	247	Right-handed alpha
Helix 122	AN5	I	249	256	Right-handed 310
Helix 123	AN6	I	257	266	Right-handed alpha
Helix 124	AN7	I	267	271	Right-handed 310
Helix 125	AN8	I	272	283	Right-handed alpha
Helix 126	AN9	I	284	286	Right-handed 310
Helix 127	AO1	J	20	42	Right-handed alpha
Helix 128	AO2	J	76	79	Right-handed 310
Helix 129	AO3	J	87	102	Right-handed alpha
Helix 130	AO4	J	114	126	Right-handed alpha
Helix 131	AO5	J	147	163	Right-handed alpha
Helix 132	AO6	J	190	199	Right-handed alpha
Helix 133	AO7	J	200	204	Right-handed 310
Helix 134	AO8	J	205	226	Right-handed alpha
Helix 135	AO9	J	234	247	Right-handed alpha
Helix 136	AP1	J	249	256	Right-handed 310
Helix 137	AP2	J	257	266	Right-handed alpha
Helix 138	AP3	J	267	271	Right-handed 310
Helix 139	AP4	J	272	283	Right-handed alpha
Helix 140	AP5	J	284	286	Right-handed 310

There are 20 sheets in PDB entry 8K04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	65	68	parallel
Strand 3	A	133	138	anti-parallel
Strand 4	A	45	50	parallel
Strand 5	A	168	173	parallel
Strand 6	A	2	8	parallel
Strand 7	A	304	312	anti-parallel
Strand 8	A	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	71	74	anti-parallel
Strand 3	A	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	65	68	parallel
Strand 3	B	133	138	anti-parallel
Strand 4	B	45	50	parallel
Strand 5	B	168	173	parallel
Strand 6	B	2	8	parallel
Strand 7	B	304	312	anti-parallel
Strand 8	B	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	65	68	parallel
Strand 3	C	133	138	anti-parallel
Strand 4	C	45	50	parallel
Strand 5	C	168	173	parallel
Strand 6	C	2	8	parallel
Strand 7	C	304	312	anti-parallel
Strand 8	C	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	71	74	anti-parallel
Strand 3	C	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	65	68	parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	45	50	parallel
Strand 5	D	168	173	parallel
Strand 6	D	2	8	parallel
Strand 7	D	304	312	anti-parallel
Strand 8	D	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	71	74	anti-parallel
Strand 3	D	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	108	first strand
Strand 2	E	65	68	parallel
Strand 3	E	133	138	anti-parallel
Strand 4	E	45	50	parallel
Strand 5	E	168	173	parallel
Strand 6	E	2	8	parallel
Strand 7	E	304	312	anti-parallel
Strand 8	E	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	108	first strand
Strand 2	F	65	68	parallel
Strand 3	F	133	138	anti-parallel
Strand 4	F	45	50	parallel
Strand 5	F	168	173	parallel
Strand 6	F	2	8	parallel
Strand 7	F	304	312	anti-parallel
Strand 8	F	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	83	first strand
Strand 2	F	71	74	anti-parallel
Strand 3	F	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	108	first strand
Strand 2	G	65	68	parallel
Strand 3	G	133	138	anti-parallel
Strand 4	G	45	50	parallel
Strand 5	G	168	173	parallel
Strand 6	G	2	8	parallel
Strand 7	G	304	312	anti-parallel
Strand 8	G	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	83	first strand
Strand 2	G	71	74	anti-parallel
Strand 3	G	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	108	first strand
Strand 2	H	65	68	parallel
Strand 3	H	133	138	anti-parallel
Strand 4	H	45	50	parallel
Strand 5	H	168	173	parallel
Strand 6	H	2	8	parallel
Strand 7	H	304	312	anti-parallel
Strand 8	H	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	83	first strand
Strand 2	H	71	74	anti-parallel
Strand 3	H	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	106	108	first strand
Strand 2	I	65	68	parallel
Strand 3	I	133	138	anti-parallel
Strand 4	I	45	50	parallel
Strand 5	I	168	173	parallel
Strand 6	I	2	8	parallel
Strand 7	I	304	312	anti-parallel
Strand 8	I	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	81	83	first strand
Strand 2	I	71	74	anti-parallel
Strand 3	I	111	113	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	108	first strand
Strand 2	J	65	68	parallel
Strand 3	J	133	138	anti-parallel
Strand 4	J	45	50	parallel
Strand 5	J	168	173	parallel
Strand 6	J	2	8	parallel
Strand 7	J	304	312	anti-parallel
Strand 8	J	288	297	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	81	83	first strand
Strand 2	J	71	74	anti-parallel
Strand 3	J	111	113	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K04

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K04