Analysis of interatomic Contacts of Structural Units in PDB entry:
8K05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K05 entry

There is 1 chain in PDB entry 8K05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28HIS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8K05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 42Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
114 116Right-handed 310
Helix 7
AA7
A
117 124Right-handed alpha
Helix 8
AA8
A
131 143Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
166 174Right-handed alpha
Helix 11
AB2
A
189 200Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
257 259Right-handed 310
Helix 14
AB5
A
260 281Right-handed alpha
Helix 15
AB6
A
284 286Right-handed 310
Helix 16
AB7
A
287 301Right-handed alpha
Helix 17
AB8
A
302 332Right-handed alpha
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There are 2 sheets in PDB entry 8K05. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
90 93parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
46 49parallel
Strand 5
A
146 148parallel
Strand 6
A
178 181parallel
Strand 7
A
250 253parallel
Strand 8
A
203 207parallel
Strand 9
A
227 228parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
128 130parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il