Analysis of interatomic Contacts of Structural Units in PDB entry:
8K06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K06 entry

There are 3 chains in PDB entry 8K06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28MET 330
B
 ARG 27MET 330
C
 SER 28MET 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8K06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 42Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
114 116Right-handed 310
Helix 7
AA7
A
117 124Right-handed alpha
Helix 8
AA8
A
131 142Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
166 174Right-handed alpha
Helix 11
AB2
A
189 200Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
257 261Right-handed 310
Helix 14
AB5
A
263 281Right-handed alpha
Helix 15
AB6
A
284 286Right-handed 310
Helix 16
AB7
A
287 300Right-handed alpha
Helix 17
AB8
A
302 330Right-handed alpha
Helix 18
AB9
B
33 43Right-handed alpha
Helix 19
AC1
B
51 56Right-handed alpha
Helix 20
AC2
B
59 77Right-handed alpha
Helix 21
AC3
B
96 107Right-handed alpha
Helix 22
AC4
B
108 110Right-handed 310
Helix 23
AC5
B
114 116Right-handed 310
Helix 24
AC6
B
117 124Right-handed alpha
Helix 25
AC7
B
131 143Right-handed alpha
Helix 26
AC8
B
158 163Right-handed alpha
Helix 27
AC9
B
166 174Right-handed alpha
Helix 28
AD1
B
189 200Right-handed alpha
Helix 29
AD2
B
230 245Right-handed alpha
Helix 30
AD3
B
257 261Right-handed 310
Helix 31
AD4
B
262 265Right-handed 310
Helix 32
AD5
B
266 281Right-handed alpha
Helix 33
AD6
B
284 286Right-handed 310
Helix 34
AD7
B
287 300Right-handed alpha
Helix 35
AD8
B
302 330Right-handed alpha
Helix 36
AD9
C
33 42Right-handed alpha
Helix 37
AE1
C
51 57Right-handed alpha
Helix 38
AE2
C
61 77Right-handed alpha
Helix 39
AE3
C
96 107Right-handed alpha
Helix 40
AE4
C
108 110Right-handed 310
Helix 41
AE5
C
114 116Right-handed 310
Helix 42
AE6
C
117 125Right-handed alpha
Helix 43
AE7
C
131 143Right-handed alpha
Helix 44
AE8
C
158 163Right-handed alpha
Helix 45
AE9
C
166 174Right-handed alpha
Helix 46
AF1
C
189 200Right-handed alpha
Helix 47
AF2
C
230 245Right-handed alpha
Helix 48
AF3
C
257 261Right-handed 310
Helix 49
AF4
C
263 281Right-handed alpha
Helix 50
AF5
C
284 286Right-handed 310
Helix 51
AF6
C
287 300Right-handed alpha
Helix 52
AF7
C
302 330Right-handed alpha
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There are 6 sheets in PDB entry 8K06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
90 93parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
46 49parallel
Strand 5
A
146 148parallel
Strand 6
A
178 181parallel
Strand 7
A
250 253parallel
Strand 8
A
203 207parallel
Strand 9
A
227 228parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
128 130parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
90 93parallel
Strand 3
B
80 87anti-parallel
Strand 4
B
128 130anti-parallel
Strand 5
B
111 113parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
90 93parallel
Strand 3
B
80 87anti-parallel
Strand 4
B
46 49parallel
Strand 5
B
146 148parallel
Strand 6
B
178 181parallel
Strand 7
B
250 253parallel
Strand 8
B
203 207parallel
Strand 9
B
227 228parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
90 93parallel
Strand 3
C
80 87anti-parallel
Strand 4
C
128 130anti-parallel
Strand 5
C
111 113parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
90 93parallel
Strand 3
C
80 87anti-parallel
Strand 4
C
46 49parallel
Strand 5
C
146 148parallel
Strand 6
C
178 181parallel
Strand 7
C
250 253parallel
Strand 8
C
203 207parallel
Strand 9
C
227 228parallel
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