Analysis of interatomic Contacts of Structural Units in PDB entry:
8K07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K07 entry

There are 3 chains in PDB entry 8K07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28MET 330
B
 SER 28MET 331
C
 LEU 29MET 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8K07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
114 116Right-handed 310
Helix 7
AA7
A
117 124Right-handed alpha
Helix 8
AA8
A
131 142Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
166 174Right-handed alpha
Helix 11
AB2
A
189 200Right-handed alpha
Helix 12
AB3
A
230 244Right-handed alpha
Helix 13
AB4
A
264 281Right-handed alpha
Helix 14
AB5
A
284 286Right-handed 310
Helix 15
AB6
A
287 300Right-handed alpha
Helix 16
AB7
A
302 330Right-handed alpha
Helix 17
AB8
B
34 43Right-handed alpha
Helix 18
AB9
B
52 57Right-handed alpha
Helix 19
AC1
B
62 78Right-handed alpha
Helix 20
AC2
B
97 108Right-handed alpha
Helix 21
AC3
B
109 111Right-handed 310
Helix 22
AC4
B
115 117Right-handed 310
Helix 23
AC5
B
118 125Right-handed alpha
Helix 24
AC6
B
132 144Right-handed alpha
Helix 25
AC7
B
159 164Right-handed alpha
Helix 26
AC8
B
167 175Right-handed alpha
Helix 27
AC9
B
190 201Right-handed alpha
Helix 28
AD1
B
231 246Right-handed alpha
Helix 29
AD2
B
258 263Right-handed 310
Helix 30
AD3
B
264 282Right-handed alpha
Helix 31
AD4
B
285 287Right-handed 310
Helix 32
AD5
B
288 301Right-handed alpha
Helix 33
AD6
B
303 331Right-handed alpha
Helix 34
AD7
C
33 42Right-handed alpha
Helix 35
AD8
C
51 57Right-handed alpha
Helix 36
AD9
C
61 77Right-handed alpha
Helix 37
AE1
C
96 106Right-handed alpha
Helix 38
AE2
C
107 110Right-handed 310
Helix 39
AE3
C
114 116Right-handed 310
Helix 40
AE4
C
117 124Right-handed alpha
Helix 41
AE5
C
131 143Right-handed alpha
Helix 42
AE6
C
158 163Right-handed alpha
Helix 43
AE7
C
166 174Right-handed alpha
Helix 44
AE8
C
189 200Right-handed alpha
Helix 45
AE9
C
230 244Right-handed alpha
Helix 46
AF1
C
270 281Right-handed alpha
Helix 47
AF2
C
284 286Right-handed 310
Helix 48
AF3
C
287 300Right-handed alpha
Helix 49
AF4
C
302 330Right-handed alpha
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There are 6 sheets in PDB entry 8K07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
90 93parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
46 49parallel
Strand 5
A
146 148parallel
Strand 6
A
178 181parallel
Strand 7
A
250 253parallel
Strand 8
A
203 207parallel
Strand 9
A
227 228parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
128 130parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
91 94parallel
Strand 3
B
81 88anti-parallel
Strand 4
B
47 50parallel
Strand 5
B
147 149parallel
Strand 6
B
179 182parallel
Strand 7
B
251 254parallel
Strand 8
B
204 208parallel
Strand 9
B
228 229parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
129 131parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
90 93parallel
Strand 3
C
80 87anti-parallel
Strand 4
C
46 49parallel
Strand 5
C
146 148parallel
Strand 6
C
178 181parallel
Strand 7
C
250 253parallel
Strand 8
C
203 207parallel
Strand 9
C
227 228parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
128 130parallel
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