Analysis of interatomic Contacts of Structural Units in PDB entry:
8K08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K08 entry

There are 2 chains in PDB entry 8K08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 8GLN 442
B
 ILE 8GLN 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 8K08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 19Right-handed 310
Helix 2
AA2
A
20 33Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
50 52Right-handed 310
Helix 5
AA5
A
97 109Right-handed alpha
Helix 6
AA6
A
121 129Right-handed alpha
Helix 7
AA7
A
140 153Right-handed alpha
Helix 8
AA8
A
178 191Right-handed alpha
Helix 9
AA9
A
201 217Right-handed alpha
Helix 10
AB1
A
238 248Right-handed alpha
Helix 11
AB2
A
266 279Right-handed alpha
Helix 12
AB3
A
302 307Right-handed alpha
Helix 13
AB4
A
319 326Right-handed alpha
Helix 14
AB5
A
337 347Right-handed alpha
Helix 15
AB6
A
359 370Right-handed alpha
Helix 16
AB7
A
385 398Right-handed alpha
Helix 17
AB8
A
399 401Right-handed 310
Helix 18
AB9
A
402 419Right-handed alpha
Helix 19
AC1
A
421 439Right-handed alpha
Helix 20
AC2
B
17 33Right-handed alpha
Helix 21
AC3
B
44 49Right-handed alpha
Helix 22
AC4
B
50 52Right-handed 310
Helix 23
AC5
B
89 95Right-handed alpha
Helix 24
AC6
B
97 109Right-handed alpha
Helix 25
AC7
B
121 129Right-handed alpha
Helix 26
AC8
B
140 153Right-handed alpha
Helix 27
AC9
B
177 191Right-handed alpha
Helix 28
AD1
B
201 217Right-handed alpha
Helix 29
AD2
B
237 248Right-handed alpha
Helix 30
AD3
B
266 279Right-handed alpha
Helix 31
AD4
B
303 308Right-handed alpha
Helix 32
AD5
B
319 325Right-handed alpha
Helix 33
AD6
B
337 347Right-handed alpha
Helix 34
AD7
B
359 370Right-handed alpha
Helix 35
AD8
B
385 398Right-handed alpha
Helix 36
AD9
B
402 419Right-handed alpha
Helix 37
AE1
B
421 439Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8K08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
38 42parallel
Strand 3
A
9 13parallel
Strand 4
A
112 115parallel
Strand 5
A
133 137parallel
Strand 6
A
195 198parallel
Strand 7
A
219 222parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 314first strand
Strand 2
A
283 287parallel
Strand 3
A
254 258parallel
Strand 4
A
329 334parallel
Strand 5
A
351 353parallel
Strand 6
A
373 375parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
38 42parallel
Strand 3
B
9 13parallel
Strand 4
B
112 115parallel
Strand 5
B
133 137parallel
Strand 6
B
195 198parallel
Strand 7
B
219 222parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 314first strand
Strand 2
B
283 287parallel
Strand 3
B
254 258parallel
Strand 4
B
329 334parallel
Strand 5
B
351 353parallel
Strand 6
B
373 375parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il