Analysis of interatomic Contacts of Structural Units in PDB entry:
8K0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K0C entry

There are 8 chains in PDB entry 8K0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
GLN 1HIS 242
F
ASP 1CYS 213
A
LEU 97CYS 601
C
GLY 96LEU 153
G
GLN 1HIS 242
H
ASP 1CYS 213
B
LEU 97CYS 601
D
GLY 96LEU 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8K0C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
E
88 92Right-handed 310
Helix 2
AA2
E
203 205Right-handed 310
Helix 3
AA3
F
120 127Right-handed alpha
Helix 4
AA4
F
182 187Right-handed alpha
Helix 5
AA5
A
98 104Right-handed alpha
Helix 6
AA6
A
105 118Right-handed alpha
Helix 7
AA7
A
118 146Right-handed alpha
Helix 8
AA8
A
204 207Right-handed 310
Helix 9
AA9
A
275 277Right-handed 310
Helix 10
AB1
A
327 332Right-handed alpha
Helix 11
AB2
A
378 382Right-handed 310
Helix 12
AB3
A
393 398Right-handed alpha
Helix 13
AB4
A
419 421Right-handed 310
Helix 14
AB5
C
97 102Right-handed alpha
Helix 15
AB6
C
105 118Right-handed alpha
Helix 16
AB7
C
118 146Right-handed alpha
Helix 17
AB8
G
88 92Right-handed 310
Helix 18
AB9
G
203 205Right-handed 310
Helix 19
AC1
H
120 127Right-handed alpha
Helix 20
AC2
H
182 187Right-handed alpha
Helix 21
AC3
B
98 104Right-handed alpha
Helix 22
AC4
B
105 118Right-handed alpha
Helix 23
AC5
B
118 146Right-handed alpha
Helix 24
AC6
B
204 207Right-handed 310
Helix 25
AC7
B
275 277Right-handed 310
Helix 26
AC8
B
327 332Right-handed alpha
Helix 27
AC9
B
378 382Right-handed 310
Helix 28
AD1
B
393 398Right-handed alpha
Helix 29
AD2
B
419 421Right-handed 310
Helix 30
AD3
D
97 102Right-handed alpha
Helix 31
AD4
D
105 118Right-handed alpha
Helix 32
AD5
D
118 146Right-handed alpha
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There are 40 sheets in PDB entry 8K0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 7first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
69 70anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 7first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
73 74anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
11 12first strand
Strand 2
E
124 127parallel
Strand 3
E
93 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
47 48first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
96 103anti-parallel
Strand 4
E
113 119anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
136 140first strand
Strand 2
E
151 159anti-parallel
Strand 3
E
147 148anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
136 140first strand
Strand 2
E
151 159anti-parallel
Strand 3
E
195 201anti-parallel
Strand 4
E
179 181anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
167 170first strand
Strand 2
E
211 216anti-parallel
Strand 3
E
221 226anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
185 186first strand
Strand 2
E
192 193anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
72 75anti-parallel
Strand 4
F
62 65anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 12first strand
Strand 2
F
102 105parallel
Strand 3
F
85 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
44 49anti-parallel
Strand 6
F
53 54anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
113 117first strand
Strand 2
F
128 138anti-parallel
Strand 3
F
172 181anti-parallel
Strand 4
F
158 162anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
153 154first strand
Strand 2
F
144 149anti-parallel
Strand 3
F
190 196anti-parallel
Strand 4
F
204 209anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 179first strand
Strand 2
A
558 568anti-parallel
Strand 3
A
572 581anti-parallel
Strand 4
A
593 596anti-parallel
Strand 5
A
200 202anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 179first strand
Strand 2
A
558 568anti-parallel
Strand 3
A
572 581anti-parallel
Strand 4
A
588 591anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
217 222first strand
Strand 2
A
230 237anti-parallel
Strand 3
A
244 255anti-parallel
Strand 4
A
265 271anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
279 286first strand
Strand 2
A
291 297anti-parallel
Strand 3
A
313 319anti-parallel
Strand 4
A
334 335anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
340 341first strand
Strand 2
A
426 430parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
361 371anti-parallel
Strand 5
A
347 350anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
340 341first strand
Strand 2
A
426 430parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
361 371anti-parallel
Strand 5
A
356 358anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
442 447first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
466 471anti-parallel
Strand 4
A
476 479anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 515first strand
Strand 2
A
520 526anti-parallel
Strand 3
A
535 540anti-parallel
Strand 4
A
545 550anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 7first strand
Strand 2
G
20 25anti-parallel
Strand 3
G
79 84anti-parallel
Strand 4
G
69 70anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 7first strand
Strand 2
G
20 25anti-parallel
Strand 3
G
79 84anti-parallel
Strand 4
G
73 74anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
11 12first strand
Strand 2
G
124 127parallel
Strand 3
G
93 94anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
47 48first strand
Strand 2
G
35 39anti-parallel
Strand 3
G
96 103anti-parallel
Strand 4
G
113 119anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
136 140first strand
Strand 2
G
151 159anti-parallel
Strand 3
G
147 148anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
136 140first strand
Strand 2
G
151 159anti-parallel
Strand 3
G
195 201anti-parallel
Strand 4
G
179 181anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
167 170first strand
Strand 2
G
211 216anti-parallel
Strand 3
G
221 226anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
185 186first strand
Strand 2
G
192 193anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
4 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
72 75anti-parallel
Strand 4
H
62 65anti-parallel
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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
102 105parallel
Strand 3
H
85 90anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
44 49anti-parallel
Strand 6
H
53 54anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
113 117first strand
Strand 2
H
128 138anti-parallel
Strand 3
H
172 181anti-parallel
Strand 4
H
158 162anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
153 154first strand
Strand 2
H
144 149anti-parallel
Strand 3
H
190 196anti-parallel
Strand 4
H
204 209anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 179first strand
Strand 2
B
558 568anti-parallel
Strand 3
B
572 581anti-parallel
Strand 4
B
593 596anti-parallel
Strand 5
B
200 202anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 179first strand
Strand 2
B
558 568anti-parallel
Strand 3
B
572 581anti-parallel
Strand 4
B
588 591anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
217 222first strand
Strand 2
B
230 237anti-parallel
Strand 3
B
244 255anti-parallel
Strand 4
B
265 271anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
279 286first strand
Strand 2
B
291 297anti-parallel
Strand 3
B
313 319anti-parallel
Strand 4
B
334 335anti-parallel
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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
340 341first strand
Strand 2
B
426 430parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
361 371anti-parallel
Strand 5
B
347 350anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
340 341first strand
Strand 2
B
426 430parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
361 371anti-parallel
Strand 5
B
356 358anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
442 447first strand
Strand 2
B
450 455anti-parallel
Strand 3
B
466 471anti-parallel
Strand 4
B
476 479anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
512 515first strand
Strand 2
B
520 526anti-parallel
Strand 3
B
535 540anti-parallel
Strand 4
B
545 550anti-parallel
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