Analysis of interatomic Contacts of Structural Units in PDB entry:
8K0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K0E entry

There are 2 chains in PDB entry 8K0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31SER 706
B
 GLN 27VAL 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8K0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 49Right-handed alpha
Helix 2
AA2
A
50 83Right-handed alpha
Helix 3
AA3
A
98 125Right-handed alpha
Helix 4
AA4
A
133 142Right-handed alpha
Helix 5
AA5
A
143 156Right-handed alpha
Helix 6
AA6
A
158 173Right-handed alpha
Helix 7
AA7
A
176 189Right-handed alpha
Helix 8
AA8
A
193 197Right-handed 310
Helix 9
AA9
A
203 217Right-handed alpha
Helix 10
AB1
A
223 244Right-handed alpha
Helix 11
AB2
A
263 281Right-handed alpha
Helix 12
AB3
A
282 285Right-handed 310
Helix 13
AB4
A
298 315Right-handed alpha
Helix 14
AB5
A
316 329Right-handed alpha
Helix 15
AB6
A
334 348Right-handed alpha
Helix 16
AB7
A
349 356Right-handed alpha
Helix 17
AB8
A
359 384Right-handed alpha
Helix 18
AB9
A
400 428Right-handed alpha
Helix 19
AC1
A
441 447Right-handed alpha
Helix 20
AC2
A
479 493Right-handed alpha
Helix 21
AC3
A
518 528Right-handed alpha
Helix 22
AC4
A
531 553Right-handed alpha
Helix 23
AC5
A
572 576Right-handed 310
Helix 24
AC6
A
594 598Right-handed 310
Helix 25
AC7
A
686 699Right-handed alpha
Helix 26
AC8
B
37 41Right-handed 310
Helix 27
AC9
B
43 57Right-handed alpha
Helix 28
AD1
B
60 90Right-handed alpha
Helix 29
AD2
B
98 102Right-handed 310
Helix 30
AD3
B
103 123Right-handed alpha
Helix 31
AD4
B
124 125Right-handed 310
Helix 32
AD5
B
126 131Right-handed 310
Helix 33
AD6
B
135 144Right-handed alpha
Helix 34
AD7
B
146 157Right-handed alpha
Helix 35
AD8
B
160 175Right-handed alpha
Helix 36
AD9
B
179 191Right-handed alpha
Helix 37
AE1
B
204 219Right-handed alpha
Helix 38
AE2
B
222 246Right-handed alpha
Helix 39
AE3
B
258 276Right-handed alpha
Helix 40
AE4
B
292 308Right-handed alpha
Helix 41
AE5
B
310 325Right-handed alpha
Helix 42
AE6
B
328 341Right-handed alpha
Helix 43
AE7
B
348 352Right-handed 310
Helix 44
AE8
B
355 376Right-handed alpha
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There are 3 sheets in PDB entry 8K0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 461first strand
Strand 2
A
471 475anti-parallel
Strand 3
A
647 652anti-parallel
Strand 4
A
610 617anti-parallel
Strand 5
A
668 677anti-parallel
Strand 6
A
560 570anti-parallel
Strand 7
A
516 517anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 587first strand
Strand 2
A
659 661anti-parallel
Strand 3
A
627 630anti-parallel
Strand 4
A
637 641anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
288 289anti-parallel
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