Analysis of interatomic Contacts of Structural Units in PDB entry:
8K0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K0I entry

There are 6 chains in PDB entry 8K0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31GLU 429
B
 GLN 27VAL 387
C
 LYS 6ALA 186
a
 GLY 31GLU 429
b
 TYR 28VAL 387
c
 LYS 5ALA 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8K0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 47Right-handed alpha
Helix 2
AA2
A
50 83Right-handed alpha
Helix 3
AA3
A
99 125Right-handed alpha
Helix 4
AA4
A
133 142Right-handed alpha
Helix 5
AA5
A
143 157Right-handed alpha
Helix 6
AA6
A
158 173Right-handed alpha
Helix 7
AA7
A
176 189Right-handed alpha
Helix 8
AA8
A
193 197Right-handed 310
Helix 9
AA9
A
203 218Right-handed alpha
Helix 10
AB1
A
220 244Right-handed alpha
Helix 11
AB2
A
253 259Right-handed 310
Helix 12
AB3
A
263 282Right-handed alpha
Helix 13
AB4
A
300 315Right-handed alpha
Helix 14
AB5
A
316 331Right-handed alpha
Helix 15
AB6
A
334 348Right-handed alpha
Helix 16
AB7
A
349 356Right-handed alpha
Helix 17
AB8
A
359 383Right-handed alpha
Helix 18
AB9
A
403 429Right-handed alpha
Helix 19
AC1
B
37 41Right-handed 310
Helix 20
AC2
B
43 57Right-handed alpha
Helix 21
AC3
B
59 85Right-handed alpha
Helix 22
AC4
B
97 102Right-handed alpha
Helix 23
AC5
B
103 123Right-handed alpha
Helix 24
AC6
B
135 144Right-handed alpha
Helix 25
AC7
B
146 157Right-handed alpha
Helix 26
AC8
B
160 175Right-handed alpha
Helix 27
AC9
B
179 191Right-handed alpha
Helix 28
AD1
B
204 219Right-handed alpha
Helix 29
AD2
B
222 246Right-handed alpha
Helix 30
AD3
B
265 276Right-handed alpha
Helix 31
AD4
B
292 308Right-handed alpha
Helix 32
AD5
B
313 325Right-handed alpha
Helix 33
AD6
B
329 341Right-handed alpha
Helix 34
AD7
B
348 353Right-handed 310
Helix 35
AD8
B
355 376Right-handed alpha
Helix 36
AD9
C
40 50Right-handed alpha
Helix 37
AE1
C
143 151Right-handed alpha
Helix 38
AE2
a
34 49Right-handed alpha
Helix 39
AE3
a
50 83Right-handed alpha
Helix 40
AE4
a
99 125Right-handed alpha
Helix 41
AE5
a
133 142Right-handed alpha
Helix 42
AE6
a
143 156Right-handed alpha
Helix 43
AE7
a
158 173Right-handed alpha
Helix 44
AE8
a
176 189Right-handed alpha
Helix 45
AE9
a
203 218Right-handed alpha
Helix 46
AF1
a
220 224Right-handed 310
Helix 47
AF2
a
225 244Right-handed alpha
Helix 48
AF3
a
263 281Right-handed alpha
Helix 49
AF4
a
300 315Right-handed alpha
Helix 50
AF5
a
317 331Right-handed alpha
Helix 51
AF6
a
334 348Right-handed alpha
Helix 52
AF7
a
349 356Right-handed alpha
Helix 53
AF8
a
359 384Right-handed alpha
Helix 54
AF9
a
400 429Right-handed alpha
Helix 55
AG1
b
43 57Right-handed alpha
Helix 56
AG2
b
59 89Right-handed alpha
Helix 57
AG3
b
98 102Right-handed 310
Helix 58
AG4
b
103 125Right-handed alpha
Helix 59
AG5
b
126 131Right-handed 310
Helix 60
AG6
b
135 144Right-handed alpha
Helix 61
AG7
b
145 158Right-handed alpha
Helix 62
AG8
b
160 172Right-handed alpha
Helix 63
AG9
b
178 191Right-handed alpha
Helix 64
AH1
b
193 197Right-handed 310
Helix 65
AH2
b
204 219Right-handed alpha
Helix 66
AH3
b
221 246Right-handed alpha
Helix 67
AH4
b
258 275Right-handed alpha
Helix 68
AH5
b
276 281Right-handed alpha
Helix 69
AH6
b
292 308Right-handed alpha
Helix 70
AH7
b
310 325Right-handed alpha
Helix 71
AH8
b
328 341Right-handed alpha
Helix 72
AH9
b
349 353Right-handed 310
Helix 73
AI1
b
355 379Right-handed alpha
Helix 74
AI2
c
37 50Right-handed alpha
Helix 75
AI3
c
127 131Right-handed 310
Helix 76
AI4
c
144 152Right-handed alpha
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There are 7 sheets in PDB entry 8K0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
288 289anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 385first strand
Strand 2
C
7 20anti-parallel
Strand 3
C
165 170anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 140first strand
Strand 2
C
26 32anti-parallel
Strand 3
C
7 20anti-parallel
Strand 4
C
173 180anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
284 285first strand
Strand 2
b
288 289anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
384 386first strand
Strand 2
c
6 20anti-parallel
Strand 3
c
23 32anti-parallel
Strand 4
c
136 142anti-parallel
Strand 5
c
105 110anti-parallel
Strand 6
c
116 120anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
384 386first strand
Strand 2
c
6 20anti-parallel
Strand 3
c
165 180anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
63 65first strand
Strand 2
c
69 71anti-parallel
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