Analysis of interatomic Contacts of Structural Units in PDB entry:
8K0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K0K entry

There are 10 chains in PDB entry 8K0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 177
B	MET 1	ASP 248
C	THR 2	LYS 305
D	THR 2	GLY 303
E	MET 1	GLY 304
F	MET 1	GLY 303
G	MET 1	GLY 303
H	MET 1	GLY 303
I	MET 1	VAL 166
J	C -7	G 52

There are 70 helices in PDB entry 8K0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	48	52	Right-handed 310
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	70	77	Right-handed alpha
Helix 6	AA6	A	81	92	Right-handed alpha
Helix 7	AA7	A	121	134	Right-handed alpha
Helix 8	AA8	A	148	152	Right-handed 310
Helix 9	AA9	A	153	159	Right-handed alpha
Helix 10	AB1	B	28	44	Right-handed alpha
Helix 11	AB2	B	78	82	Right-handed 310
Helix 12	AB3	B	109	122	Right-handed alpha
Helix 13	AB4	B	144	155	Right-handed alpha
Helix 14	AB5	B	169	178	Right-handed alpha
Helix 15	AB6	B	194	198	Right-handed 310
Helix 16	AB7	B	225	229	Right-handed 310
Helix 17	AB8	B	235	237	Right-handed 310
Helix 18	AB9	C	97	107	Right-handed alpha
Helix 19	AC1	C	111	125	Right-handed alpha
Helix 20	AC2	C	126	134	Right-handed 310
Helix 21	AC3	C	163	179	Right-handed alpha
Helix 22	AC4	C	225	234	Right-handed alpha
Helix 23	AC5	C	269	279	Right-handed alpha
Helix 24	AC6	C	284	298	Right-handed alpha
Helix 25	AC7	D	97	107	Right-handed alpha
Helix 26	AC8	D	111	125	Right-handed alpha
Helix 27	AC9	D	126	134	Right-handed 310
Helix 28	AD1	D	163	178	Right-handed alpha
Helix 29	AD2	D	225	234	Right-handed alpha
Helix 30	AD3	D	256	259	Right-handed 310
Helix 31	AD4	D	269	279	Right-handed alpha
Helix 32	AD5	D	284	298	Right-handed alpha
Helix 33	AD6	E	53	57	Right-handed 310
Helix 34	AD7	E	97	108	Right-handed alpha
Helix 35	AD8	E	111	125	Right-handed alpha
Helix 36	AD9	E	126	134	Right-handed 310
Helix 37	AE1	E	163	178	Right-handed alpha
Helix 38	AE2	E	225	234	Right-handed alpha
Helix 39	AE3	E	256	259	Right-handed 310
Helix 40	AE4	E	269	279	Right-handed alpha
Helix 41	AE5	E	284	298	Right-handed alpha
Helix 42	AE6	F	97	108	Right-handed alpha
Helix 43	AE7	F	111	125	Right-handed alpha
Helix 44	AE8	F	126	134	Right-handed 310
Helix 45	AE9	F	163	178	Right-handed alpha
Helix 46	AF1	F	225	234	Right-handed alpha
Helix 47	AF2	F	269	279	Right-handed alpha
Helix 48	AF3	F	284	298	Right-handed alpha
Helix 49	AF4	G	54	59	Right-handed 310
Helix 50	AF5	G	97	107	Right-handed alpha
Helix 51	AF6	G	111	125	Right-handed alpha
Helix 52	AF7	G	126	134	Right-handed 310
Helix 53	AF8	G	163	178	Right-handed alpha
Helix 54	AF9	G	225	234	Right-handed alpha
Helix 55	AG1	G	256	259	Right-handed 310
Helix 56	AG2	G	269	279	Right-handed alpha
Helix 57	AG3	G	284	298	Right-handed alpha
Helix 58	AG4	H	97	107	Right-handed alpha
Helix 59	AG5	H	111	125	Right-handed alpha
Helix 60	AG6	H	126	133	Right-handed 310
Helix 61	AG7	H	163	178	Right-handed alpha
Helix 62	AG8	H	225	234	Right-handed alpha
Helix 63	AG9	H	256	259	Right-handed 310
Helix 64	AH1	H	269	279	Right-handed alpha
Helix 65	AH2	H	284	298	Right-handed alpha
Helix 66	AH3	I	16	31	Right-handed alpha
Helix 67	AH4	I	62	70	Right-handed alpha
Helix 68	AH5	I	73	75	Right-handed 310
Helix 69	AH6	I	98	109	Right-handed alpha
Helix 70	AH7	I	113	122	Right-handed alpha

There are 45 sheets in PDB entry 8K0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	45	47	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	19	20	anti-parallel
Strand 3	A	119	120	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	111	117	anti-parallel
Strand 3	B	205	219	parallel
Strand 4	B	159	163	anti-parallel
Strand 5	B	46	59	anti-parallel
Strand 6	B	93	105	anti-parallel
Strand 7	B	3	16	anti-parallel
Strand 8	B	138	141	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	129	133	anti-parallel
Strand 3	B	3	16	anti-parallel
Strand 4	B	93	105	anti-parallel
Strand 5	B	46	59	anti-parallel
Strand 6	B	159	163	anti-parallel
Strand 7	B	205	219	anti-parallel
Strand 8	B	180	191	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	163	168	anti-parallel
Strand 3	B	23	25	parallel
Strand 4	B	18	20	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	239	241	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	299	302	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	21	27	anti-parallel
Strand 4	C	182	192	first strand
Strand 5	C	139	145	anti-parallel
Strand 6	C	148	152	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	36	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	76	86	anti-parallel
Strand 4	C	221	224	first strand
Strand 5	C	217	218	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	47	first strand
Strand 2	C	60	67	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	247	248	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	299	300	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	21	27	anti-parallel
Strand 4	D	182	192	first strand
Strand 5	D	139	145	anti-parallel
Strand 6	D	148	152	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	36	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	76	86	anti-parallel
Strand 4	D	221	224	first strand
Strand 5	D	217	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	47	first strand
Strand 2	D	60	67	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	214	215	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	247	248	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	299	300	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	76	86	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	182	192	first strand
Strand 5	E	139	145	anti-parallel
Strand 6	E	148	152	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	36	first strand
Strand 2	E	21	27	anti-parallel
Strand 3	E	76	86	anti-parallel
Strand 4	E	221	224	first strand
Strand 5	E	217	218	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	45	first strand
Strand 2	E	62	67	anti-parallel
Strand 3	E	211	215	parallel
Strand 4	E	203	204	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	247	248	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	E	260	261	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	299	300	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	21	27	anti-parallel
Strand 4	F	182	192	first strand
Strand 5	F	139	145	anti-parallel
Strand 6	F	148	153	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	36	first strand
Strand 2	F	21	27	anti-parallel
Strand 3	F	76	86	anti-parallel
Strand 4	F	221	224	first strand
Strand 5	F	217	218	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	44	first strand
Strand 2	F	63	67	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	260	261	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	299	300	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	76	86	anti-parallel
Strand 3	G	21	27	anti-parallel
Strand 4	G	182	192	first strand
Strand 5	G	139	145	anti-parallel
Strand 6	G	148	153	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	36	first strand
Strand 2	G	21	27	anti-parallel
Strand 3	G	76	86	anti-parallel
Strand 4	G	221	224	first strand
Strand 5	G	217	218	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	46	first strand
Strand 2	G	61	67	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	237	first strand
Strand 2	G	247	248	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	254	255	first strand
Strand 2	G	260	261	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	299	300	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	76	86	anti-parallel
Strand 3	H	21	27	anti-parallel
Strand 4	H	182	192	first strand
Strand 5	H	139	145	anti-parallel
Strand 6	H	148	153	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	36	first strand
Strand 2	H	21	27	anti-parallel
Strand 3	H	76	86	anti-parallel
Strand 4	H	221	224	first strand
Strand 5	H	217	218	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	42	first strand
Strand 2	H	65	67	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	235	237	first strand
Strand 2	H	247	248	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	255	first strand
Strand 2	H	260	261	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	52	56	anti-parallel
Strand 3	I	5	9	anti-parallel
Strand 4	I	77	79	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	93	first strand
Strand 2	I	144	152	anti-parallel
Strand 3	I	134	138	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	159	first strand
Strand 2	I	162	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K0K