Analysis of interatomic Contacts of Structural Units in PDB entry:
8K0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K0X entry

There are 2 chains in PDB entry 8K0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 35HIS 662
C
 CYS 35HIS 662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8K0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 113Right-handed alpha
Helix 2
AA2
A
136 140Right-handed 310
Helix 3
AA3
A
156 169Right-handed alpha
Helix 4
AA4
A
183 189Right-handed alpha
Helix 5
AA5
A
208 219Right-handed alpha
Helix 6
AA6
A
240 256Right-handed alpha
Helix 7
AA7
A
268 273Right-handed alpha
Helix 8
AA8
A
294 303Right-handed alpha
Helix 9
AA9
A
311 319Right-handed alpha
Helix 10
AB1
A
339 349Right-handed alpha
Helix 11
AB2
A
349 354Right-handed alpha
Helix 12
AB3
A
380 397Right-handed alpha
Helix 13
AB4
A
397 406Right-handed alpha
Helix 14
AB5
A
407 425Right-handed alpha
Helix 15
AB6
A
432 454Right-handed alpha
Helix 16
AB7
A
459 461Right-handed 310
Helix 17
AB8
A
462 471Right-handed alpha
Helix 18
AB9
A
476 489Right-handed alpha
Helix 19
AC1
A
494 505Right-handed alpha
Helix 20
AC2
A
513 542Right-handed alpha
Helix 21
AC3
A
549 561Right-handed alpha
Helix 22
AC4
A
573 579Right-handed 310
Helix 23
AC5
A
580 594Right-handed alpha
Helix 24
AC6
A
636 655Right-handed alpha
Helix 25
AC7
C
106 113Right-handed alpha
Helix 26
AC8
C
136 140Right-handed 310
Helix 27
AC9
C
156 169Right-handed alpha
Helix 28
AD1
C
183 189Right-handed alpha
Helix 29
AD2
C
208 219Right-handed alpha
Helix 30
AD3
C
240 256Right-handed alpha
Helix 31
AD4
C
268 273Right-handed alpha
Helix 32
AD5
C
294 303Right-handed alpha
Helix 33
AD6
C
311 319Right-handed alpha
Helix 34
AD7
C
339 349Right-handed alpha
Helix 35
AD8
C
349 354Right-handed alpha
Helix 36
AD9
C
380 397Right-handed alpha
Helix 37
AE1
C
397 406Right-handed alpha
Helix 38
AE2
C
407 425Right-handed alpha
Helix 39
AE3
C
432 454Right-handed alpha
Helix 40
AE4
C
459 461Right-handed 310
Helix 41
AE5
C
462 471Right-handed alpha
Helix 42
AE6
C
476 489Right-handed alpha
Helix 43
AE7
C
494 505Right-handed alpha
Helix 44
AE8
C
513 542Right-handed alpha
Helix 45
AE9
C
549 561Right-handed alpha
Helix 46
AF1
C
573 579Right-handed 310
Helix 47
AF2
C
580 594Right-handed alpha
Helix 48
AF3
C
636 655Right-handed alpha
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There are 6 sheets in PDB entry 8K0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
128 129anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
97 100parallel
Strand 3
A
277 281parallel
Strand 4
A
286 290anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
227 230parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 91first strand
Strand 2
C
40 42anti-parallel
Strand 3
C
128 129anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
C
97 100parallel
Strand 3
C
277 281parallel
Strand 4
C
286 290anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 145first strand
Strand 2
C
227 230parallel
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