Analysis of interatomic Contacts of Structural Units in PDB entry:
8K10

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K10 entry

There are 2 chains in PDB entry 8K10 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 25	LEU 817
B	PRO 25	LEU 817

There are 28 helices in PDB entry 8K10. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	289	317	Right-handed alpha
Helix 2	AA2	A	462	479	Right-handed alpha
Helix 3	AA3	A	499	505	Right-handed alpha
Helix 4	AA4	A	506	532	Right-handed alpha
Helix 5	AA5	A	548	569	Right-handed alpha
Helix 6	AA6	A	576	596	Right-handed alpha
Helix 7	AA7	A	610	626	Right-handed alpha
Helix 8	AA8	A	631	652	Right-handed alpha
Helix 9	AA9	A	687	709	Right-handed alpha
Helix 10	AB1	A	713	740	Right-handed alpha
Helix 11	AB2	A	745	767	Right-handed alpha
Helix 12	AB3	A	776	781	Right-handed alpha
Helix 13	AB4	A	782	784	Right-handed 310
Helix 14	AB5	A	794	816	Right-handed alpha
Helix 15	AB6	B	289	317	Right-handed alpha
Helix 16	AB7	B	462	479	Right-handed alpha
Helix 17	AB8	B	499	505	Right-handed alpha
Helix 18	AB9	B	506	532	Right-handed alpha
Helix 19	AC1	B	548	569	Right-handed alpha
Helix 20	AC2	B	576	596	Right-handed alpha
Helix 21	AC3	B	610	626	Right-handed alpha
Helix 22	AC4	B	631	652	Right-handed alpha
Helix 23	AC5	B	687	709	Right-handed alpha
Helix 24	AC6	B	713	740	Right-handed alpha
Helix 25	AC7	B	745	767	Right-handed alpha
Helix 26	AC8	B	776	781	Right-handed alpha
Helix 27	AC9	B	782	784	Right-handed 310
Helix 28	AD1	B	794	816	Right-handed alpha

There are 10 sheets in PDB entry 8K10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	47	58	parallel
Strand 3	A	125	135	anti-parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	90	95	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	64	71	anti-parallel
Strand 4	A	111	115	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	271	272	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	278	286	anti-parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	228	234	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	176	first strand
Strand 2	A	243	249	anti-parallel
Strand 3	A	198	204	anti-parallel
Strand 4	A	221	225	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	47	58	parallel
Strand 3	B	125	135	anti-parallel
Strand 4	B	80	85	anti-parallel
Strand 5	B	90	95	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	142	151	anti-parallel
Strand 3	B	64	71	anti-parallel
Strand 4	B	111	115	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	106	109	anti-parallel
Strand 3	B	271	272	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	172	176	parallel
Strand 3	B	243	249	anti-parallel
Strand 4	B	198	204	anti-parallel
Strand 5	B	221	225	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	278	286	anti-parallel
Strand 3	B	184	191	anti-parallel
Strand 4	B	228	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K10

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K10