Analysis of interatomic Contacts of Structural Units in PDB entry:
8K17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K17 entry

There are 4 chains in PDB entry 8K17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31SER 706
B
 GLN 27VAL 388
C
 LYS 5ASN 189
E
 PRO 112ARG 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8K17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 49Right-handed alpha
Helix 2
AA2
A
50 83Right-handed alpha
Helix 3
AA3
A
97 125Right-handed alpha
Helix 4
AA4
A
133 142Right-handed alpha
Helix 5
AA5
A
143 156Right-handed alpha
Helix 6
AA6
A
158 173Right-handed alpha
Helix 7
AA7
A
176 189Right-handed alpha
Helix 8
AA8
A
203 218Right-handed alpha
Helix 9
AA9
A
220 223Right-handed 310
Helix 10
AB1
A
224 244Right-handed alpha
Helix 11
AB2
A
263 286Right-handed alpha
Helix 12
AB3
A
298 315Right-handed alpha
Helix 13
AB4
A
316 329Right-handed alpha
Helix 14
AB5
A
334 348Right-handed alpha
Helix 15
AB6
A
349 356Right-handed alpha
Helix 16
AB7
A
359 384Right-handed alpha
Helix 17
AB8
A
395 399Right-handed 310
Helix 18
AB9
A
400 428Right-handed alpha
Helix 19
AC1
A
441 447Right-handed alpha
Helix 20
AC2
A
463 467Right-handed 310
Helix 21
AC3
A
479 493Right-handed alpha
Helix 22
AC4
A
517 528Right-handed alpha
Helix 23
AC5
A
531 553Right-handed alpha
Helix 24
AC6
A
685 699Right-handed alpha
Helix 25
AC7
B
37 41Right-handed 310
Helix 26
AC8
B
43 57Right-handed alpha
Helix 27
AC9
B
59 89Right-handed alpha
Helix 28
AD1
B
98 102Right-handed 310
Helix 29
AD2
B
103 124Right-handed alpha
Helix 30
AD3
B
126 131Right-handed 310
Helix 31
AD4
B
135 144Right-handed alpha
Helix 32
AD5
B
146 158Right-handed alpha
Helix 33
AD6
B
160 175Right-handed alpha
Helix 34
AD7
B
178 191Right-handed alpha
Helix 35
AD8
B
204 219Right-handed alpha
Helix 36
AD9
B
222 246Right-handed alpha
Helix 37
AE1
B
258 276Right-handed alpha
Helix 38
AE2
B
292 308Right-handed alpha
Helix 39
AE3
B
310 325Right-handed alpha
Helix 40
AE4
B
328 341Right-handed alpha
Helix 41
AE5
B
348 353Right-handed 310
Helix 42
AE6
B
355 379Right-handed alpha
Helix 43
AE7
C
40 50Right-handed alpha
Helix 44
AE8
C
143 152Right-handed alpha
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There are 7 sheets in PDB entry 8K17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 461first strand
Strand 2
A
471 475anti-parallel
Strand 3
A
648 652anti-parallel
Strand 4
A
610 617anti-parallel
Strand 5
A
668 677anti-parallel
Strand 6
A
560 570anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 594first strand
Strand 2
A
599 601anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 624first strand
Strand 2
A
664 666anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 641first strand
Strand 2
A
627 630anti-parallel
Strand 3
A
659 661anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
288 289anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 386first strand
Strand 2
C
6 20anti-parallel
Strand 3
C
23 32anti-parallel
Strand 4
C
136 140anti-parallel
Strand 5
C
105 108anti-parallel
Strand 6
C
120 123anti-parallel
Strand 7
C
69 72anti-parallel
Strand 8
C
61 63anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 386first strand
Strand 2
C
6 20anti-parallel
Strand 3
C
165 180anti-parallel
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