Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1D entry

There are 2 chains in PDB entry 8K1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 301LEU 809
B
 ILE 301LEU 809
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8K1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
302 333Right-handed alpha
Helix 2
AA2
A
442 474Right-handed alpha
Helix 3
AA3
A
495 500Right-handed alpha
Helix 4
AA4
A
501 524Right-handed alpha
Helix 5
AA5
A
542 565Right-handed alpha
Helix 6
AA6
A
567 586Right-handed alpha
Helix 7
AA7
A
629 644Right-handed alpha
Helix 8
AA8
A
682 705Right-handed alpha
Helix 9
AA9
A
708 735Right-handed alpha
Helix 10
AB1
A
744 762Right-handed alpha
Helix 11
AB2
A
771 778Right-handed alpha
Helix 12
AB3
A
789 809Right-handed alpha
Helix 13
AB4
B
302 333Right-handed alpha
Helix 14
AB5
B
442 474Right-handed alpha
Helix 15
AB6
B
495 500Right-handed alpha
Helix 16
AB7
B
501 524Right-handed alpha
Helix 17
AB8
B
542 565Right-handed alpha
Helix 18
AB9
B
567 586Right-handed alpha
Helix 19
AC1
B
629 644Right-handed alpha
Helix 20
AC2
B
682 705Right-handed alpha
Helix 21
AC3
B
708 735Right-handed alpha
Helix 22
AC4
B
744 762Right-handed alpha
Helix 23
AC5
B
771 776Right-handed alpha
Helix 24
AC6
B
789 809Right-handed alpha
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There are no sheets in PDB entry 8K1D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il