Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1F entry

There are 3 chains in PDB entry 8K1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 11PRO 214
B
 LEU 5PRO 214
C
 ASN 9PRO 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8K1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
71 82Right-handed alpha
Helix 5
AA5
A
94 109Right-handed alpha
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
142 152Right-handed alpha
Helix 8
AA8
A
179 195Right-handed alpha
Helix 9
AA9
B
6 20Right-handed alpha
Helix 10
AB1
B
43 57Right-handed alpha
Helix 11
AB2
B
71 79Right-handed alpha
Helix 12
AB3
B
94 108Right-handed alpha
Helix 13
AB4
B
119 124Right-handed alpha
Helix 14
AB5
B
142 152Right-handed alpha
Helix 15
AB6
B
166 170Right-handed 310
Helix 16
AB7
B
176 178Right-handed 310
Helix 17
AB8
B
179 197Right-handed alpha
Helix 18
AB9
C
10 20Right-handed alpha
Helix 19
AC1
C
25 31Right-handed alpha
Helix 20
AC2
C
43 57Right-handed alpha
Helix 21
AC3
C
71 80Right-handed alpha
Helix 22
AC4
C
81 85Right-handed 310
Helix 23
AC5
C
94 109Right-handed alpha
Helix 24
AC6
C
119 124Right-handed alpha
Helix 25
AC7
C
125 127Right-handed 310
Helix 26
AC8
C
142 152Right-handed alpha
Helix 27
AC9
C
175 197Right-handed alpha
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There are 3 sheets in PDB entry 8K1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
87 92parallel
Strand 3
A
62 66parallel
Strand 4
A
131 137parallel
Strand 5
A
154 163parallel
Strand 6
A
208 212anti-parallel
Strand 7
A
198 202anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
88 92parallel
Strand 3
B
63 65parallel
Strand 4
B
131 137parallel
Strand 5
B
154 163parallel
Strand 6
B
208 212anti-parallel
Strand 7
B
198 202anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 117first strand
Strand 2
C
87 92parallel
Strand 3
C
62 66parallel
Strand 4
C
131 137parallel
Strand 5
C
154 163parallel
Strand 6
C
208 212anti-parallel
Strand 7
C
198 202anti-parallel
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