Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1H entry

There is 1 chain in PDB entry 8K1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8K1H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 19Right-handed 310
Helix 2
AA2
A
20 26Right-handed alpha
Helix 3
AA3
A
37 55Right-handed alpha
Helix 4
AA4
A
69 83Right-handed alpha
Helix 5
AA5
A
93 108Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
154 160Right-handed alpha
Helix 8
AA8
A
161 186Right-handed alpha
Helix 9
AA9
A
196 224Right-handed alpha
Helix 10
AB1
A
227 249Right-handed alpha
Helix 11
AB2
A
251 260Right-handed alpha
Helix 12
AB3
A
261 263Right-handed 310
Helix 13
AB4
A
270 286Right-handed alpha
Helix 14
AB5
A
289 303Right-handed alpha
Helix 15
AB6
A
309 313Right-handed 310
Helix 16
AB7
A
317 330Right-handed alpha
Helix 17
AB8
A
334 339Right-handed 310
Helix 18
AB9
A
344 366Right-handed alpha
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There are 2 sheets in PDB entry 8K1H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
149 153parallel
Strand 3
A
111 115parallel
Strand 4
A
87 92parallel
Strand 5
A
31 36parallel
Strand 6
A
58 63parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
137 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il