Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1L entry

There are 2 chains in PDB entry 8K1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18TYR 996
B
 THR 45ASP 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8K1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 33Right-handed alpha
Helix 2
AA2
A
41 52Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
78 99Right-handed alpha
Helix 5
AA5
A
105 128Right-handed alpha
Helix 6
AA6
A
133 138Right-handed alpha
Helix 7
AA7
A
150 153Right-handed 310
Helix 8
AA8
A
212 216Right-handed 310
Helix 9
AA9
A
242 253Right-handed alpha
Helix 10
AB1
A
259 284Right-handed alpha
Helix 11
AB2
A
284 289Right-handed alpha
Helix 12
AB3
A
293 305Right-handed alpha
Helix 13
AB4
A
313 330Right-handed alpha
Helix 14
AB5
A
337 345Right-handed 310
Helix 15
AB6
A
394 405Right-handed alpha
Helix 16
AB7
A
427 442Right-handed alpha
Helix 17
AB8
A
444 451Right-handed alpha
Helix 18
AB9
A
485 491Right-handed alpha
Helix 19
AC1
A
506 523Right-handed alpha
Helix 20
AC2
A
573 584Right-handed alpha
Helix 21
AC3
A
595 607Right-handed alpha
Helix 22
AC4
A
615 624Right-handed alpha
Helix 23
AC5
A
641 647Right-handed alpha
Helix 24
AC6
A
649 660Right-handed alpha
Helix 25
AC7
A
669 682Right-handed alpha
Helix 26
AC8
A
696 703Right-handed alpha
Helix 27
AC9
A
714 720Right-handed alpha
Helix 28
AD1
A
731 755Right-handed alpha
Helix 29
AD2
A
757 770Right-handed alpha
Helix 30
AD3
A
778 787Right-handed alpha
Helix 31
AD4
A
788 790Right-handed 310
Helix 32
AD5
A
791 797Right-handed alpha
Helix 33
AD6
A
798 800Right-handed 310
Helix 34
AD7
A
819 827Right-handed alpha
Helix 35
AD8
A
828 850Right-handed alpha
Helix 36
AD9
A
852 857Right-handed alpha
Helix 37
AE1
A
859 865Right-handed alpha
Helix 38
AE2
A
880 912Right-handed alpha
Helix 39
AE3
A
916 921Right-handed alpha
Helix 40
AE4
A
924 942Right-handed alpha
Helix 41
AE5
A
964 984Right-handed alpha
Helix 42
AE6
A
988 993Right-handed alpha
Helix 43
AE7
B
59 90Right-handed alpha
Helix 44
AE8
B
138 149Right-handed alpha
Helix 45
AE9
B
153 159Right-handed alpha
Helix 46
AF1
B
180 185Right-handed 310
Helix 47
AF2
B
189 196Right-handed 310
Helix 48
AF3
B
229 242Right-handed alpha
Helix 49
AF4
B
243 248Right-handed 310
Helix 50
AF5
B
258 265Right-handed alpha
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There are 9 sheets in PDB entry 8K1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
167 169anti-parallel
Strand 3
A
232 237anti-parallel
Strand 4
A
179 184anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
202 203anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
723 725anti-parallel
Strand 3
A
705 709parallel
Strand 4
A
687 690parallel
Strand 5
A
349 352parallel
Strand 6
A
587 591parallel
Strand 7
A
662 665parallel
Strand 8
A
637 638parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
367 370anti-parallel
Strand 3
A
558 566anti-parallel
Strand 4
A
526 535anti-parallel
Strand 5
A
478 484anti-parallel
Strand 6
A
466 471anti-parallel
Strand 7
A
453 456anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
367 370anti-parallel
Strand 3
A
558 566anti-parallel
Strand 4
A
493 498parallel
Strand 5
A
501 504anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
424 425anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 872first strand
Strand 2
A
878 879anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
204 207anti-parallel
Strand 3
B
293 295anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
328 335parallel
Strand 3
B
305 314anti-parallel
Strand 4
B
251 256anti-parallel
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