Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1M entry

There are 3 chains in PDB entry 8K1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 20CYS 548
C
 VAL 8SER 218
D
 VAL 8SER 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 8K1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
48 55Right-handed alpha
Helix 2
2
D
78 82Right-handed alpha
Helix 3
3
D
99 109Right-handed alpha
Helix 4
4
D
115 125Right-handed alpha
Helix 5
5
D
138 150Right-handed alpha
Helix 6
6
D
168 183Right-handed alpha
Helix 7
7
D
195 201Right-handed alpha
Helix 8
8
B
26 36Right-handed alpha
Helix 9
9
B
40 63Right-handed alpha
Helix 10
10
B
67 79Right-handed alpha
Helix 11
11
B
81 87Right-handed alpha
Helix 12
12
B
95 99Right-handed alpha
Helix 13
13
B
101 125Right-handed alpha
Helix 14
14
B
130 135Right-handed alpha
Helix 15
15
B
143 169Right-handed alpha
Helix 16
16
B
174 200Right-handed alpha
Helix 17
17
B
205 228Right-handed alpha
Helix 18
18
B
232 236Right-handed alpha
Helix 19
19
B
238 244Right-handed alpha
Helix 20
20
B
253 275Right-handed alpha
Helix 21
21
B
300 306Right-handed alpha
Helix 22
22
B
309 329Right-handed alpha
Helix 23
23
B
331 336Right-handed alpha
Helix 24
24
B
344 350Right-handed alpha
Helix 25
25
B
356 388Right-handed alpha
Helix 26
26
B
391 397Right-handed alpha
Helix 27
27
B
405 436Right-handed alpha
Helix 28
28
B
442 467Right-handed alpha
Helix 29
29
B
472 493Right-handed alpha
Helix 30
30
B
499 503Right-handed alpha
Helix 31
31
B
507 510Right-handed alpha
Helix 32
32
B
522 540Right-handed alpha
Helix 33
33
C
48 55Right-handed alpha
Helix 34
34
C
78 82Right-handed alpha
Helix 35
35
C
99 109Right-handed alpha
Helix 36
36
C
115 125Right-handed alpha
Helix 37
37
C
138 150Right-handed alpha
Helix 38
38
C
168 183Right-handed alpha
Helix 39
39
C
195 201Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8K1M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 67first strand
Strand 2
D
11 18first strand
Strand 3
D
23 33first strand
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 67first strand
Strand 2
C
11 18first strand
Strand 3
C
23 33first strand
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 217first strand
Strand 2
D
205 208first strand
Strand 3
D
36 41first strand
Strand 4
D
187 191first strand
Strand 5
D
155 160first strand
Strand 6
D
83 87first strand
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
205 208first strand
Strand 3
C
36 41first strand
Strand 4
C
187 191first strand
Strand 5
C
155 160first strand
Strand 6
C
83 87first strand
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il