Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1N entry

There are 3 chains in PDB entry 8K1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ARG 19CYS 548
E
 VAL 8SER 218
D
 VAL 8SER 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8K1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
48 55Right-handed alpha
Helix 2
AA2
D
78 82Right-handed alpha
Helix 3
AA3
D
99 109Right-handed alpha
Helix 4
AA4
D
115 125Right-handed alpha
Helix 5
AA5
D
138 150Right-handed alpha
Helix 6
AA6
D
168 183Right-handed alpha
Helix 7
AA7
D
195 201Right-handed alpha
Helix 8
AA8
C
26 36Right-handed alpha
Helix 9
AA9
C
40 63Right-handed alpha
Helix 10
AB1
C
67 79Right-handed alpha
Helix 11
AB2
C
81 87Right-handed alpha
Helix 12
AB3
C
95 99Right-handed alpha
Helix 13
AB4
C
101 125Right-handed alpha
Helix 14
AB5
C
130 135Right-handed alpha
Helix 15
AB6
C
143 169Right-handed alpha
Helix 16
AB7
C
174 200Right-handed alpha
Helix 17
AB8
C
205 228Right-handed alpha
Helix 18
AB9
C
232 236Right-handed alpha
Helix 19
AC1
C
238 244Right-handed alpha
Helix 20
AC2
C
253 275Right-handed alpha
Helix 21
AC3
C
300 306Right-handed alpha
Helix 22
AC4
C
309 329Right-handed alpha
Helix 23
AC5
C
331 336Right-handed alpha
Helix 24
AC6
C
344 350Right-handed alpha
Helix 25
AC7
C
356 388Right-handed alpha
Helix 26
AC8
C
391 397Right-handed alpha
Helix 27
AC9
C
405 436Right-handed alpha
Helix 28
AD1
C
442 467Right-handed alpha
Helix 29
AD2
C
472 493Right-handed alpha
Helix 30
AD3
C
499 503Right-handed alpha
Helix 31
AD4
C
507 510Right-handed alpha
Helix 32
AD5
C
522 540Right-handed alpha
Helix 33
AD6
E
48 55Right-handed alpha
Helix 34
AD7
E
78 82Right-handed alpha
Helix 35
AD8
E
99 109Right-handed alpha
Helix 36
AD9
E
115 125Right-handed alpha
Helix 37
AE1
E
138 150Right-handed alpha
Helix 38
AE2
E
168 183Right-handed alpha
Helix 39
AE3
E
195 201Right-handed alpha
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There are 4 sheets in PDB entry 8K1N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 67first strand
Strand 2
D
11 18first strand
Strand 3
D
23 33first strand
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 217first strand
Strand 2
D
205 208first strand
Strand 3
D
36 41first strand
Strand 4
D
187 191first strand
Strand 5
D
155 160first strand
Strand 6
D
83 87first strand
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 67first strand
Strand 2
E
11 18first strand
Strand 3
E
23 33first strand
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
214 217first strand
Strand 2
E
205 208first strand
Strand 3
E
36 41first strand
Strand 4
E
187 191first strand
Strand 5
E
155 160first strand
Strand 6
E
83 87first strand
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