Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1R entry

There are 2 chains in PDB entry 8K1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LYS 450
A
 MET 1LYS 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8K1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 20Right-handed alpha
Helix 2
AA2
B
22 33Right-handed alpha
Helix 3
AA3
B
36 59Right-handed alpha
Helix 4
AA4
B
70 88Right-handed alpha
Helix 5
AA5
B
91 102Right-handed alpha
Helix 6
AA6
B
103 123Right-handed alpha
Helix 7
AA7
B
125 134Right-handed alpha
Helix 8
AA8
B
154 160Right-handed alpha
Helix 9
AA9
B
163 180Right-handed alpha
Helix 10
AB1
B
191 213Right-handed alpha
Helix 11
AB2
B
221 235Right-handed alpha
Helix 12
AB3
B
239 259Right-handed alpha
Helix 13
AB4
B
270 291Right-handed alpha
Helix 14
AB5
B
297 302Right-handed alpha
Helix 15
AB6
B
303 305Right-handed 310
Helix 16
AB7
B
306 328Right-handed alpha
Helix 17
AB8
B
387 400Right-handed alpha
Helix 18
AB9
B
415 426Right-handed alpha
Helix 19
AC1
A
3 20Right-handed alpha
Helix 20
AC2
A
22 33Right-handed alpha
Helix 21
AC3
A
36 59Right-handed alpha
Helix 22
AC4
A
70 88Right-handed alpha
Helix 23
AC5
A
91 102Right-handed alpha
Helix 24
AC6
A
103 123Right-handed alpha
Helix 25
AC7
A
125 134Right-handed alpha
Helix 26
AC8
A
154 160Right-handed alpha
Helix 27
AC9
A
163 181Right-handed alpha
Helix 28
AD1
A
191 213Right-handed alpha
Helix 29
AD2
A
221 235Right-handed alpha
Helix 30
AD3
A
239 259Right-handed alpha
Helix 31
AD4
A
270 291Right-handed alpha
Helix 32
AD5
A
297 302Right-handed alpha
Helix 33
AD6
A
303 305Right-handed 310
Helix 34
AD7
A
306 328Right-handed alpha
Helix 35
AD8
A
388 400Right-handed alpha
Helix 36
AD9
A
415 426Right-handed alpha
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There are 2 sheets in PDB entry 8K1R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 381first strand
Strand 2
B
406 411parallel
Strand 3
B
442 447anti-parallel
Strand 4
B
430 436anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
406 411parallel
Strand 3
A
442 447anti-parallel
Strand 4
A
430 436anti-parallel
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