Analysis of interatomic Contacts of Structural Units in PDB entry:
8K1X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K1X entry

There are 3 chains in PDB entry 8K1X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10GLU 418
B
 ALA 10GLU 418
C
 ALA 10GLU 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8K1X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
54 62Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
101 114Right-handed alpha
Helix 6
AA6
A
120 141Right-handed alpha
Helix 7
AA7
A
152 156Right-handed alpha
Helix 8
AA8
A
158 170Right-handed alpha
Helix 9
AA9
A
173 189Right-handed alpha
Helix 10
AB1
A
191 212Right-handed alpha
Helix 11
AB2
A
219 225Right-handed alpha
Helix 12
AB3
A
236 251Right-handed alpha
Helix 13
AB4
A
252 268Right-handed alpha
Helix 14
AB5
A
270 274Right-handed 310
Helix 15
AB6
A
277 292Right-handed alpha
Helix 16
AB7
A
323 328Right-handed alpha
Helix 17
AB8
A
352 356Right-handed 310
Helix 18
AB9
A
359 378Right-handed alpha
Helix 19
AC1
B
26 33Right-handed alpha
Helix 20
AC2
B
34 36Right-handed 310
Helix 21
AC3
B
54 62Right-handed alpha
Helix 22
AC4
B
70 74Right-handed 310
Helix 23
AC5
B
75 79Right-handed 310
Helix 24
AC6
B
84 88Right-handed 310
Helix 25
AC7
B
96 100Right-handed 310
Helix 26
AC8
B
102 114Right-handed alpha
Helix 27
AC9
B
123 141Right-handed alpha
Helix 28
AD1
B
152 156Right-handed alpha
Helix 29
AD2
B
158 170Right-handed alpha
Helix 30
AD3
B
175 189Right-handed alpha
Helix 31
AD4
B
191 212Right-handed alpha
Helix 32
AD5
B
219 225Right-handed alpha
Helix 33
AD6
B
236 251Right-handed alpha
Helix 34
AD7
B
252 268Right-handed alpha
Helix 35
AD8
B
270 274Right-handed 310
Helix 36
AD9
B
277 292Right-handed alpha
Helix 37
AE1
B
323 328Right-handed alpha
Helix 38
AE2
B
359 378Right-handed alpha
Helix 39
AE3
C
26 35Right-handed alpha
Helix 40
AE4
C
54 62Right-handed alpha
Helix 41
AE5
C
70 74Right-handed 310
Helix 42
AE6
C
75 79Right-handed 310
Helix 43
AE7
C
96 100Right-handed 310
Helix 44
AE8
C
101 114Right-handed alpha
Helix 45
AE9
C
124 142Right-handed alpha
Helix 46
AF1
C
152 156Right-handed alpha
Helix 47
AF2
C
158 170Right-handed alpha
Helix 48
AF3
C
172 189Right-handed alpha
Helix 49
AF4
C
191 212Right-handed alpha
Helix 50
AF5
C
219 225Right-handed alpha
Helix 51
AF6
C
236 251Right-handed alpha
Helix 52
AF7
C
252 268Right-handed alpha
Helix 53
AF8
C
270 274Right-handed 310
Helix 54
AF9
C
277 292Right-handed alpha
Helix 55
AG1
C
323 329Right-handed alpha
Helix 56
AG2
C
352 356Right-handed 310
Helix 57
AG3
C
359 378Right-handed alpha
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There are 12 sheets in PDB entry 8K1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
319 322parallel
Strand 4
A
301 303anti-parallel
Strand 5
A
67 68anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
412 413anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
313 314anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 402first strand
Strand 2
A
405 410anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
319 322parallel
Strand 4
B
301 303anti-parallel
Strand 5
B
67 68anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
412 414anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
313 314anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 401first strand
Strand 2
B
406 410anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 44first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
319 322parallel
Strand 4
C
301 303anti-parallel
Strand 5
C
67 68anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
412 413anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
307 308first strand
Strand 2
C
313 314anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
399 401first strand
Strand 2
C
406 408anti-parallel
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