Analysis of interatomic Contacts of Structural Units in PDB entry:
8K28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K28 entry

There are 12 chains in PDB entry 8K28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLU 174
B	MET 1	TYR 246
C	THR 2	GLY 303
D	THR 2	GLY 303
E	THR 2	GLY 303
F	THR 2	GLY 303
G	THR 2	GLY 303
I	MET 1	VAL 166
Q	T 17	T 49
R	A 1	A 27
P	C -7	U 51
H	THR 2	GLY 303

There are 55 helices in PDB entry 8K28. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	61	68	Right-handed alpha
Helix 4	AA4	A	70	77	Right-handed alpha
Helix 5	AA5	A	81	90	Right-handed alpha
Helix 6	AA6	A	121	131	Right-handed alpha
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	153	159	Right-handed alpha
Helix 9	AA9	B	28	42	Right-handed alpha
Helix 10	AB1	B	109	122	Right-handed alpha
Helix 11	AB2	B	144	155	Right-handed alpha
Helix 12	AB3	B	169	177	Right-handed alpha
Helix 13	AB4	B	221	223	Right-handed 310
Helix 14	AB5	C	98	105	Right-handed alpha
Helix 15	AB6	C	111	126	Right-handed alpha
Helix 16	AB7	C	163	179	Right-handed alpha
Helix 17	AB8	C	225	235	Right-handed alpha
Helix 18	AB9	C	269	279	Right-handed alpha
Helix 19	AC1	C	287	298	Right-handed alpha
Helix 20	AC2	D	100	107	Right-handed alpha
Helix 21	AC3	D	111	125	Right-handed alpha
Helix 22	AC4	D	166	178	Right-handed alpha
Helix 23	AC5	D	225	234	Right-handed alpha
Helix 24	AC6	D	271	280	Right-handed alpha
Helix 25	AC7	D	287	296	Right-handed alpha
Helix 26	AC8	E	53	58	Right-handed 310
Helix 27	AC9	E	98	105	Right-handed alpha
Helix 28	AD1	E	111	125	Right-handed alpha
Helix 29	AD2	E	164	178	Right-handed alpha
Helix 30	AD3	E	225	234	Right-handed alpha
Helix 31	AD4	E	269	280	Right-handed alpha
Helix 32	AD5	E	286	298	Right-handed alpha
Helix 33	AD6	F	99	107	Right-handed alpha
Helix 34	AD7	F	112	125	Right-handed alpha
Helix 35	AD8	F	163	179	Right-handed alpha
Helix 36	AD9	F	225	234	Right-handed alpha
Helix 37	AE1	F	269	280	Right-handed alpha
Helix 38	AE2	F	286	298	Right-handed alpha
Helix 39	AE3	G	53	57	Right-handed 310
Helix 40	AE4	G	99	107	Right-handed alpha
Helix 41	AE5	G	111	125	Right-handed alpha
Helix 42	AE6	G	164	179	Right-handed alpha
Helix 43	AE7	G	225	234	Right-handed alpha
Helix 44	AE8	G	269	280	Right-handed alpha
Helix 45	AE9	G	284	296	Right-handed alpha
Helix 46	AF1	I	16	30	Right-handed alpha
Helix 47	AF2	I	62	69	Right-handed alpha
Helix 48	AF3	I	98	109	Right-handed alpha
Helix 49	AF4	I	115	121	Right-handed alpha
Helix 50	AF5	H	100	107	Right-handed alpha
Helix 51	AF6	H	111	125	Right-handed alpha
Helix 52	AF7	H	164	177	Right-handed alpha
Helix 53	AF8	H	225	234	Right-handed alpha
Helix 54	AF9	H	269	280	Right-handed alpha
Helix 55	AG1	H	284	298	Right-handed alpha

There are 47 sheets in PDB entry 8K28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	45	47	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	19	20	anti-parallel
Strand 3	A	119	120	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	111	117	anti-parallel
Strand 3	B	205	219	parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	111	117	anti-parallel
Strand 3	B	205	219	parallel
Strand 4	B	180	191	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	164	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	93	104	anti-parallel
Strand 3	B	3	16	anti-parallel
Strand 4	B	130	131	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	93	104	anti-parallel
Strand 3	B	3	16	anti-parallel
Strand 4	B	139	140	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	239	241	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	299	301	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	22	26	anti-parallel
Strand 4	C	35	36	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	182	192	anti-parallel
Strand 4	C	138	145	anti-parallel
Strand 5	C	148	152	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	47	first strand
Strand 2	C	60	67	anti-parallel
Strand 3	C	211	213	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	221	222	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	299	300	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	22	26	anti-parallel
Strand 4	D	35	36	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	182	191	anti-parallel
Strand 4	D	139	145	anti-parallel
Strand 5	D	148	152	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	63	67	anti-parallel
Strand 3	D	211	213	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	221	222	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	299	300	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	76	86	anti-parallel
Strand 3	E	22	26	anti-parallel
Strand 4	E	35	36	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	76	86	anti-parallel
Strand 3	E	182	191	anti-parallel
Strand 4	E	139	144	anti-parallel
Strand 5	E	149	152	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	47	first strand
Strand 2	E	60	69	anti-parallel
Strand 3	E	198	199	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	218	first strand
Strand 2	E	221	222	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	247	248	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	E	260	261	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	22	26	anti-parallel
Strand 4	F	35	36	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	182	191	anti-parallel
Strand 4	F	139	144	anti-parallel
Strand 5	F	149	152	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	45	first strand
Strand 2	F	62	67	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	204	first strand
Strand 2	F	214	215	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	218	first strand
Strand 2	F	221	222	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	247	248	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	260	261	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	299	300	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	76	86	anti-parallel
Strand 3	G	22	26	anti-parallel
Strand 4	G	35	36	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	76	86	anti-parallel
Strand 3	G	182	191	anti-parallel
Strand 4	G	139	145	anti-parallel
Strand 5	G	148	152	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	44	first strand
Strand 2	G	63	69	anti-parallel
Strand 3	G	198	199	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	217	218	first strand
Strand 2	G	221	222	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	237	first strand
Strand 2	G	247	248	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	55	first strand
Strand 2	I	5	9	anti-parallel
Strand 3	I	77	79	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	94	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	134	135	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	299	300	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	76	86	anti-parallel
Strand 3	H	22	26	anti-parallel
Strand 4	H	35	36	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	76	86	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	139	145	anti-parallel
Strand 5	H	148	152	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	43	first strand
Strand 2	H	64	67	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	235	237	first strand
Strand 2	H	247	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K28

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K28