Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K2F entry

There is 1 chain in PDB entry 8K2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9THR 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8K2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 77Right-handed 310
Helix 2
AA2
A
201 211Right-handed alpha
Helix 3
AA3
A
233 240Right-handed alpha
Helix 4
AA4
A
264 273Right-handed alpha
Helix 5
AA5
A
292 294Right-handed 310
Helix 6
AA6
A
295 309Right-handed alpha
Helix 7
AA7
A
320 324Right-handed 310
Helix 8
AA8
A
341 345Right-handed 310
Helix 9
AA9
A
346 356Right-handed alpha
Helix 10
AB1
A
381 387Right-handed alpha
Helix 11
AB2
A
389 396Right-handed alpha
Helix 12
AB3
A
436 440Right-handed 310
Helix 13
AB4
A
447 469Right-handed alpha
Helix 14
AB5
A
471 483Right-handed alpha
Helix 15
AB6
A
492 511Right-handed alpha
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There are 6 sheets in PDB entry 8K2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
79 89anti-parallel
Strand 5
A
105 113anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
170 183parallel
Strand 3
A
156 165anti-parallel
Strand 4
A
56 63anti-parallel
Strand 5
A
133 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
73 74anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
191 196parallel
Strand 3
A
399 402parallel
Strand 4
A
359 363parallel
Strand 5
A
337 340parallel
Strand 6
A
312 316parallel
Strand 7
A
281 287parallel
Strand 8
A
244 245parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
424 427anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
445 446anti-parallel
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