Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K2G entry

There are 2 chains in PDB entry 8K2G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 9	LYS 513
A	SER 9	LYS 513

There are 31 helices in PDB entry 8K2G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	75	77	Right-handed 310
Helix 2	AA2	B	201	211	Right-handed alpha
Helix 3	AA3	B	231	240	Right-handed alpha
Helix 4	AA4	B	264	273	Right-handed alpha
Helix 5	AA5	B	292	294	Right-handed 310
Helix 6	AA6	B	295	309	Right-handed alpha
Helix 7	AA7	B	320	324	Right-handed 310
Helix 8	AA8	B	341	345	Right-handed 310
Helix 9	AA9	B	346	357	Right-handed alpha
Helix 10	AB1	B	381	387	Right-handed alpha
Helix 11	AB2	B	389	396	Right-handed alpha
Helix 12	AB3	B	436	440	Right-handed 310
Helix 13	AB4	B	447	469	Right-handed alpha
Helix 14	AB5	B	471	483	Right-handed alpha
Helix 15	AB6	B	492	511	Right-handed alpha
Helix 16	AB7	A	75	77	Right-handed 310
Helix 17	AB8	A	201	211	Right-handed alpha
Helix 18	AB9	A	221	225	Right-handed 310
Helix 19	AC1	A	231	240	Right-handed alpha
Helix 20	AC2	A	264	274	Right-handed alpha
Helix 21	AC3	A	292	294	Right-handed 310
Helix 22	AC4	A	295	309	Right-handed alpha
Helix 23	AC5	A	320	324	Right-handed 310
Helix 24	AC6	A	341	345	Right-handed 310
Helix 25	AC7	A	346	357	Right-handed alpha
Helix 26	AC8	A	381	387	Right-handed alpha
Helix 27	AC9	A	389	396	Right-handed alpha
Helix 28	AD1	A	436	440	Right-handed 310
Helix 29	AD2	A	447	469	Right-handed alpha
Helix 30	AD3	A	471	483	Right-handed alpha
Helix 31	AD4	A	492	513	Right-handed alpha

There are 12 sheets in PDB entry 8K2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	42	50	anti-parallel
Strand 3	B	141	148	anti-parallel
Strand 4	B	79	89	anti-parallel
Strand 5	B	105	113	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	39	first strand
Strand 2	B	169	183	parallel
Strand 3	B	156	166	anti-parallel
Strand 4	B	66	68	anti-parallel
Strand 5	B	73	74	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	39	first strand
Strand 2	B	169	183	parallel
Strand 3	B	156	166	anti-parallel
Strand 4	B	56	63	anti-parallel
Strand 5	B	133	135	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	191	196	parallel
Strand 3	B	399	402	parallel
Strand 4	B	359	363	parallel
Strand 5	B	337	340	parallel
Strand 6	B	312	316	parallel
Strand 7	B	281	287	parallel
Strand 8	B	244	245	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	424	427	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	434	first strand
Strand 2	B	445	446	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	16	first strand
Strand 2	A	42	50	anti-parallel
Strand 3	A	141	148	anti-parallel
Strand 4	A	79	89	anti-parallel
Strand 5	A	105	113	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	39	first strand
Strand 2	A	169	183	parallel
Strand 3	A	156	166	anti-parallel
Strand 4	A	56	63	anti-parallel
Strand 5	A	133	135	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	73	74	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	191	196	parallel
Strand 3	A	399	402	parallel
Strand 4	A	359	363	parallel
Strand 5	A	337	340	parallel
Strand 6	A	312	316	parallel
Strand 7	A	281	287	parallel
Strand 8	A	244	245	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	424	427	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	434	first strand
Strand 2	A	445	446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K2G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2G