Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K2H entry

There are 2 chains in PDB entry 8K2H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 11PRO 642
A
 THR 10PRO 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8K2H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
15 19Right-handed 310
Helix 2
AA2
B
41 45Right-handed alpha
Helix 3
AA3
B
290 297Right-handed alpha
Helix 4
AA4
B
303 318Right-handed alpha
Helix 5
AA5
B
319 321Right-handed 310
Helix 6
AA6
B
331 333Right-handed 310
Helix 7
AA7
B
346 354Right-handed alpha
Helix 8
AA8
B
374 389Right-handed alpha
Helix 9
AA9
B
390 393Right-handed 310
Helix 10
AB1
B
405 423Right-handed alpha
Helix 11
AB2
B
444 451Right-handed alpha
Helix 12
AB3
B
451 457Right-handed alpha
Helix 13
AB4
B
468 471Right-handed 310
Helix 14
AB5
B
473 475Right-handed 310
Helix 15
AB6
B
476 482Right-handed alpha
Helix 16
AB7
B
483 484Right-handed 310
Helix 17
AB8
B
485 489Right-handed 310
Helix 18
AB9
B
512 527Right-handed alpha
Helix 19
AC1
B
565 569Right-handed 310
Helix 20
AC2
B
579 602Right-handed alpha
Helix 21
AC3
B
602 613Right-handed alpha
Helix 22
AC4
B
626 641Right-handed alpha
Helix 23
AC5
A
15 19Right-handed 310
Helix 24
AC6
A
41 44Right-handed 310
Helix 25
AC7
A
290 298Right-handed alpha
Helix 26
AC8
A
303 318Right-handed alpha
Helix 27
AC9
A
319 321Right-handed 310
Helix 28
AD1
A
331 333Right-handed 310
Helix 29
AD2
A
346 354Right-handed alpha
Helix 30
AD3
A
374 388Right-handed alpha
Helix 31
AD4
A
391 393Right-handed 310
Helix 32
AD5
A
405 423Right-handed alpha
Helix 33
AD6
A
444 451Right-handed alpha
Helix 34
AD7
A
451 457Right-handed alpha
Helix 35
AD8
A
468 471Right-handed 310
Helix 36
AD9
A
473 475Right-handed 310
Helix 37
AE1
A
476 482Right-handed alpha
Helix 38
AE2
A
483 484Right-handed 310
Helix 39
AE3
A
485 489Right-handed 310
Helix 40
AE4
A
512 527Right-handed alpha
Helix 41
AE5
A
565 570Right-handed alpha
Helix 42
AE6
A
578 602Right-handed alpha
Helix 43
AE7
A
602 613Right-handed alpha
Helix 44
AE8
A
626 641Right-handed alpha
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There are 11 sheets in PDB entry 8K2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
78 87anti-parallel
Strand 3
B
154 161anti-parallel
Strand 4
B
121 129anti-parallel
Strand 5
B
132 138anti-parallel
Strand 6
B
576 578anti-parallel
Strand 7
B
563 564anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 75first strand
Strand 2
B
263 275parallel
Strand 3
B
169 180anti-parallel
Strand 4
B
98 104anti-parallel
Strand 5
B
143 148anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
114 115anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 338first strand
Strand 2
B
323 329anti-parallel
Strand 3
B
284 289parallel
Strand 4
B
530 533parallel
Strand 5
B
491 495parallel
Strand 6
B
462 466parallel
Strand 7
B
428 432parallel
Strand 8
B
395 401parallel
Strand 9
B
361 362parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 618first strand
Strand 2
B
621 622anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
78 87anti-parallel
Strand 3
A
154 161anti-parallel
Strand 4
A
121 129anti-parallel
Strand 5
A
132 138anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
263 275parallel
Strand 3
A
169 179anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
143 148anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
114 115anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
323 329anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
531 533parallel
Strand 5
A
491 495parallel
Strand 6
A
462 466parallel
Strand 7
A
428 432parallel
Strand 8
A
395 401parallel
Strand 9
A
361 362parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
576 577anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
621 622anti-parallel
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