Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K2K entry

There is 1 chain in PDB entry 8K2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27SER 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8K2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
220 237Right-handed alpha
Helix 3
AA3
A
264 277Right-handed alpha
Helix 4
AA4
A
320 341Right-handed alpha
Helix 5
AA5
A
343 345Right-handed 310
Helix 6
AA6
A
356 358Right-handed 310
Helix 7
AA7
A
359 374Right-handed alpha
Helix 8
AA8
A
398 405Right-handed alpha
Helix 9
AA9
A
405 415Right-handed alpha
Helix 10
AB1
A
440 445Right-handed alpha
Helix 11
AB2
A
445 454Right-handed alpha
Helix 12
AB3
A
503 526Right-handed alpha
Helix 13
AB4
A
526 536Right-handed alpha
Helix 14
AB5
A
547 563Right-handed alpha
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There are 9 sheets in PDB entry 8K2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
64 73anti-parallel
Strand 3
A
147 154anti-parallel
Strand 4
A
103 110anti-parallel
Strand 5
A
127 134anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
177 193parallel
Strand 3
A
162 174anti-parallel
Strand 4
A
87 89anti-parallel
Strand 5
A
92 97anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
177 193parallel
Strand 3
A
162 174anti-parallel
Strand 4
A
77 84anti-parallel
Strand 5
A
139 141anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
457 460parallel
Strand 3
A
421 422parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
282 285parallel
Strand 3
A
347 350parallel
Strand 4
A
378 383parallel
Strand 5
A
394 397parallel
Strand 6
A
418 419parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
261 263anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
299 307anti-parallel
Strand 3
A
310 316anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
500 502anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 540first strand
Strand 2
A
543 544anti-parallel
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