Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K2L entry

There is 1 chain in PDB entry 8K2L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 18ALA 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8K2L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 80Right-handed 310
Helix 2
AA2
A
120 122Right-handed 310
Helix 3
AA3
A
141 145Right-handed 310
Helix 4
AA4
A
198 207Right-handed alpha
Helix 5
AA5
A
212 229Right-handed alpha
Helix 6
AA6
A
271 285Right-handed alpha
Helix 7
AA7
A
326 347Right-handed alpha
Helix 8
AA8
A
362 364Right-handed 310
Helix 9
AA9
A
365 380Right-handed alpha
Helix 10
AB1
A
391 397Right-handed alpha
Helix 11
AB2
A
410 416Right-handed alpha
Helix 12
AB3
A
441 447Right-handed alpha
Helix 13
AB4
A
447 455Right-handed alpha
Helix 14
AB5
A
470 474Right-handed 310
Helix 15
AB6
A
507 531Right-handed alpha
Helix 16
AB7
A
531 541Right-handed alpha
Helix 17
AB8
A
555 573Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8K2L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
82 92anti-parallel
Strand 5
A
110 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
171 185parallel
Strand 3
A
155 165anti-parallel
Strand 4
A
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
459 462parallel
Strand 3
A
422 424parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
288 291parallel
Strand 3
A
353 356parallel
Strand 4
A
384 388parallel
Strand 5
A
402 404parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 270anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 310first strand
Strand 2
A
313 318anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 499first strand
Strand 2
A
504 506anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il