Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K2T entry

There are 3 chains in PDB entry 8K2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 624
B
 MET 1SER 624
C
 MET 1TRP 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8K2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
29 53Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
113 115Right-handed 310
Helix 7
AA7
A
116 133Right-handed alpha
Helix 8
AA8
A
147 150Right-handed 310
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
189 202Right-handed alpha
Helix 11
AB2
A
242 254Right-handed alpha
Helix 12
AB3
A
285 290Right-handed 310
Helix 13
AB4
A
311 314Right-handed 310
Helix 14
AB5
A
315 319Right-handed 310
Helix 15
AB6
A
335 342Right-handed alpha
Helix 16
AB7
A
343 367Right-handed alpha
Helix 17
AB8
A
367 383Right-handed alpha
Helix 18
AB9
A
384 389Right-handed alpha
Helix 19
AC1
A
392 398Right-handed alpha
Helix 20
AC2
A
416 422Right-handed alpha
Helix 21
AC3
A
437 444Right-handed alpha
Helix 22
AC4
A
446 454Right-handed alpha
Helix 23
AC5
A
464 469Right-handed alpha
Helix 24
AC6
A
501 520Right-handed alpha
Helix 25
AC7
A
550 555Right-handed alpha
Helix 26
AC8
A
574 583Right-handed alpha
Helix 27
AC9
A
585 605Right-handed alpha
Helix 28
AD1
A
610 624Right-handed alpha
Helix 29
AD2
B
13 25Right-handed alpha
Helix 30
AD3
B
29 51Right-handed alpha
Helix 31
AD4
B
52 58Right-handed 310
Helix 32
AD5
B
86 92Right-handed alpha
Helix 33
AD6
B
116 133Right-handed alpha
Helix 34
AD7
B
147 150Right-handed 310
Helix 35
AD8
B
184 188Right-handed 310
Helix 36
AD9
B
189 202Right-handed alpha
Helix 37
AE1
B
242 254Right-handed alpha
Helix 38
AE2
B
285 290Right-handed 310
Helix 39
AE3
B
311 314Right-handed 310
Helix 40
AE4
B
335 342Right-handed alpha
Helix 41
AE5
B
343 367Right-handed alpha
Helix 42
AE6
B
367 383Right-handed alpha
Helix 43
AE7
B
384 389Right-handed alpha
Helix 44
AE8
B
392 398Right-handed alpha
Helix 45
AE9
B
416 423Right-handed alpha
Helix 46
AF1
B
437 443Right-handed alpha
Helix 47
AF2
B
444 452Right-handed alpha
Helix 48
AF3
B
463 472Right-handed alpha
Helix 49
AF4
B
501 520Right-handed alpha
Helix 50
AF5
B
551 555Right-handed 310
Helix 51
AF6
B
574 583Right-handed alpha
Helix 52
AF7
B
585 606Right-handed alpha
Helix 53
AF8
B
610 624Right-handed alpha
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There are 9 sheets in PDB entry 8K2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
151 156anti-parallel
Strand 3
A
134 142anti-parallel
Strand 4
A
173 180anti-parallel
Strand 5
A
75 80anti-parallel
Strand 6
A
65 70anti-parallel
Strand 7
A
208 215parallel
Strand 8
A
220 226anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 268first strand
Strand 2
A
274 281anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
296 301parallel
Strand 5
A
304 310anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
458 459anti-parallel
Strand 4
A
430 433parallel
Strand 5
A
478 481parallel
Strand 6
A
474 475anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
567 570parallel
Strand 3
A
537 540anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 167first strand
Strand 2
B
151 156anti-parallel
Strand 3
B
134 142anti-parallel
Strand 4
B
173 180anti-parallel
Strand 5
B
75 80anti-parallel
Strand 6
B
65 70anti-parallel
Strand 7
B
208 215parallel
Strand 8
B
220 226anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 268first strand
Strand 2
B
274 280anti-parallel
Strand 3
B
322 327anti-parallel
Strand 4
B
296 301parallel
Strand 5
B
304 310anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
414 415anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 460first strand
Strand 2
B
430 434parallel
Strand 3
B
478 482parallel
Strand 4
B
474 475anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 528first strand
Strand 2
B
567 570parallel
Strand 3
B
537 540anti-parallel
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