Analysis of interatomic Contacts of Structural Units in PDB entry:
8K2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K2W entry

There are 2 chains in PDB entry 8K2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 GLN 3VAL 121
R
 ALA 54TRP 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8K2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
N
88 92Right-handed 310
Helix 2
AA2
R
55 81Right-handed alpha
Helix 3
AA3
R
86 104Right-handed alpha
Helix 4
AA4
R
105 115Right-handed alpha
Helix 5
AA5
R
121 155Right-handed alpha
Helix 6
AA6
R
165 189Right-handed alpha
Helix 7
AA7
R
208 244Right-handed alpha
Helix 8
AA8
R
252 292Right-handed alpha
Helix 9
AA9
R
297 330Right-handed alpha
Helix 10
AB1
R
330 338Right-handed alpha
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There are 3 sheets in PDB entry 8K2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
5 7first strand
Strand 2
N
22 27anti-parallel
Strand 3
N
79 84anti-parallel
Strand 4
N
69 74anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
59 61first strand
Strand 2
N
51 53anti-parallel
Strand 3
N
32 39anti-parallel
Strand 4
N
94 102anti-parallel
Strand 5
N
110 113anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
59 61first strand
Strand 2
N
51 53anti-parallel
Strand 3
N
32 39anti-parallel
Strand 4
N
94 102anti-parallel
Strand 5
N
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il