Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K3C entry

There are 4 chains in PDB entry 8K3C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
GLN 1SER 216
C
GLU 1SER 238
A
SER 132CYS 601
B
ILE 131CYS 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8K3C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
D
80 84Right-handed 310
Helix 2
AA2
D
125 131Right-handed alpha
Helix 3
AA3
D
185 191Right-handed alpha
Helix 4
AA4
C
87 91Right-handed 310
Helix 5
AA5
C
145 150Right-handed alpha
Helix 6
AA6
A
133 146Right-handed alpha
Helix 7
AA7
A
327 331Right-handed alpha
Helix 8
AA8
A
373 375Right-handed 310
Helix 9
AA9
A
378 382Right-handed 310
Helix 10
AB1
A
393 398Right-handed alpha
Helix 11
AB2
B
132 146Right-handed alpha
Helix 12
AB3
B
204 207Right-handed 310
Helix 13
AB4
B
306 310Right-handed 310
Helix 14
AB5
B
373 375Right-handed 310
Helix 15
AB6
B
378 382Right-handed 310
Helix 16
AB7
B
393 398Right-handed alpha
Helix 17
AB8
B
419 421Right-handed 310
Back to top of page

There are 27 sheets in PDB entry 8K3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 23first strand
Strand 2
D
71 77anti-parallel
Strand 3
D
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 49first strand
Strand 2
D
34 39anti-parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
98 101anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 49first strand
Strand 2
D
34 39anti-parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
118 121first strand
Strand 2
D
134 143anti-parallel
Strand 3
D
176 184anti-parallel
Strand 4
D
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
157 158first strand
Strand 2
D
148 154anti-parallel
Strand 3
D
195 201anti-parallel
Strand 4
D
204 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3 7first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 12first strand
Strand 2
C
125 129parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 102first strand
Strand 2
C
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
138 142first strand
Strand 2
C
153 163anti-parallel
Strand 3
C
194 203anti-parallel
Strand 4
C
182 183anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
138 142first strand
Strand 2
C
153 163anti-parallel
Strand 3
C
194 203anti-parallel
Strand 4
C
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 172first strand
Strand 2
C
213 218anti-parallel
Strand 3
C
223 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
199 202first strand
Strand 2
A
593 596anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 224first strand
Strand 2
A
228 237anti-parallel
Strand 3
A
244 257anti-parallel
Strand 4
A
263 271anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
279 286first strand
Strand 2
A
290 297anti-parallel
Strand 3
A
315 320anti-parallel
Strand 4
A
332 336anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 350first strand
Strand 2
A
361 371anti-parallel
Strand 3
A
356 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 350first strand
Strand 2
A
361 371anti-parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
428 430anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
442 447first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
465 471anti-parallel
Strand 4
A
476 479anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 515first strand
Strand 2
A
520 526anti-parallel
Strand 3
A
535 540anti-parallel
Strand 4
A
545 550anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
557 567first strand
Strand 2
A
572 581anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 179first strand
Strand 2
B
558 568anti-parallel
Strand 3
B
572 582anti-parallel
Strand 4
B
587 596anti-parallel
Strand 5
B
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 218first strand
Strand 2
B
228 237anti-parallel
Strand 3
B
222 225anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 218first strand
Strand 2
B
228 237anti-parallel
Strand 3
B
244 257anti-parallel
Strand 4
B
263 271anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
279 286first strand
Strand 2
B
290 297anti-parallel
Strand 3
B
314 320anti-parallel
Strand 4
B
332 336anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
340 341first strand
Strand 2
B
426 430parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
361 371anti-parallel
Strand 5
B
347 350anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
340 341first strand
Strand 2
B
426 430parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
361 371anti-parallel
Strand 5
B
356 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
442 447first strand
Strand 2
B
450 455anti-parallel
Strand 3
B
465 471anti-parallel
Strand 4
B
476 479anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
511 513first strand
Strand 2
B
521 526anti-parallel
Strand 3
B
535 540anti-parallel
Strand 4
B
545 550anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il