Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K3G entry

There are 2 chains in PDB entry 8K3G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	PRO 464
B	ASN 32	PRO 464

There are 38 helices in PDB entry 8K3G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	52	Right-handed alpha
Helix 2	AA2	A	64	69	Right-handed alpha
Helix 3	AA3	A	79	84	Right-handed alpha
Helix 4	AA4	A	117	127	Right-handed alpha
Helix 5	AA5	A	132	139	Right-handed alpha
Helix 6	AA6	A	147	156	Right-handed alpha
Helix 7	AA7	A	160	169	Right-handed alpha
Helix 8	AA8	A	177	187	Right-handed alpha
Helix 9	AA9	A	200	211	Right-handed alpha
Helix 10	AB1	A	220	225	Right-handed 310
Helix 11	AB2	A	232	240	Right-handed alpha
Helix 12	AB3	A	256	260	Right-handed 310
Helix 13	AB4	A	261	268	Right-handed alpha
Helix 14	AB5	A	275	285	Right-handed alpha
Helix 15	AB6	A	310	327	Right-handed alpha
Helix 16	AB7	A	330	332	Right-handed 310
Helix 17	AB8	A	416	427	Right-handed alpha
Helix 18	AB9	A	432	437	Right-handed alpha
Helix 19	AC1	A	441	445	Right-handed 310
Helix 20	AC2	B	41	52	Right-handed alpha
Helix 21	AC3	B	64	69	Right-handed alpha
Helix 22	AC4	B	79	84	Right-handed alpha
Helix 23	AC5	B	117	127	Right-handed alpha
Helix 24	AC6	B	132	139	Right-handed alpha
Helix 25	AC7	B	147	156	Right-handed alpha
Helix 26	AC8	B	160	170	Right-handed alpha
Helix 27	AC9	B	177	187	Right-handed alpha
Helix 28	AD1	B	200	211	Right-handed alpha
Helix 29	AD2	B	220	225	Right-handed 310
Helix 30	AD3	B	232	241	Right-handed alpha
Helix 31	AD4	B	256	260	Right-handed 310
Helix 32	AD5	B	261	268	Right-handed alpha
Helix 33	AD6	B	275	285	Right-handed alpha
Helix 34	AD7	B	310	327	Right-handed alpha
Helix 35	AD8	B	330	332	Right-handed 310
Helix 36	AD9	B	416	427	Right-handed alpha
Helix 37	AE1	B	432	437	Right-handed alpha
Helix 38	AE2	B	441	445	Right-handed 310

There are 11 sheets in PDB entry 8K3G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	244	248	parallel
Strand 3	A	290	294	parallel
Strand 4	A	54	60	parallel
Strand 5	A	334	340	parallel
Strand 6	A	387	389	anti-parallel
Strand 7	A	188	190	anti-parallel
Strand 8	A	397	399	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	99	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	170	171	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	413	414	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	372	375	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	410	411	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	244	248	parallel
Strand 3	B	290	294	parallel
Strand 4	B	54	60	parallel
Strand 5	B	334	340	parallel
Strand 6	B	387	389	anti-parallel
Strand 7	B	188	190	anti-parallel
Strand 8	B	397	399	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	99	101	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	413	414	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	366	first strand
Strand 2	B	372	375	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	410	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K3G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3G